CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 118609 148692 44.37 267301 2 118116 165369 41.67 283485 3 117477 150983 43.76 268460 4 127291 132934 48.92 260225 5 122804 116490 51.32 239294 6 125461 99223 55.84 224684 7 140289 95360 59.53 235649 8 66687 112780 37.16 179467 9 59508 106334 35.88 165842 10 59042 103015 36.43 162057 11 61422 107993 36.26 169415 12 59759 109712 35.26 169471 13 59014 111795 34.55 170809 14 56277 113737 33.10 170014 15 55315 114701 32.54 170016 16 50664 114058 30.76 164722 17 48139 112427 29.98 160566 18 48552 113598 29.94 162150 19 47611 114717 29.33 162328 20 48859 116623 29.53 165482 21 48057 116514 29.20 164571 22 47153 114760 29.12 161913 23 46984 114467 29.10 161451 24 47044 115291 28.98 162335 25 45781 113580 28.73 159361 26 46201 113480 28.93 159681 27 45971 115414 28.49 161385 28 47118 115316 29.01 162434 29 45942 114557 28.62 160499 30 45240 114746 28.28 159986 31 46631 113319 29.15 159950 32 45107 111446 28.81 156553 33 45690 112527 28.88 158217 34 46858 112401 29.42 159259 35 45494 112112 28.87 157606 36 45222 113122 28.56 158344 37 44000 110886 28.41 154886 38 43531 108996 28.54 152527 39 44834 111856 28.61 156690 40 44636 110130 28.84 154766 41 43731 110212 28.41 153943 42 45143 112459 28.64 157602 43 44160 110308 28.59 154468 44 43812 109512 28.57 153324 45 44436 109231 28.92 153667 46 44443 109643 28.84 154086 47 43905 107630 28.97 151535 48 43432 108259 28.63 151691 49 44961 108592 29.28 153553 50 43274 108599 28.49 151873 51 43805 108580 28.75 152385 52 43715 111324 28.20 155039 53 42904 106857 28.65 149761 54 42734 105775 28.78 148509 55 42082 104364 28.74 146446 56 41781 104029 28.65 145810 57 42248 104677 28.75 146925 58 41749 104507 28.55 146256 59 42013 103456 28.88 145469 60 41193 104099 28.35 145292 61 41824 102386 29.00 144210 62 40425 102391 28.31 142816 63 40290 100966 28.52 141256 64 39703 100756 28.27 140459 65 39921 100665 28.40 140586 66 40324 100646 28.60 140970 67 39858 98957 28.71 138815 68 39288 98395 28.54 137683 69 38919 98319 28.36 137238 70 38727 97603 28.41 136330 71 37709 95819 28.24 133528 72 37560 95693 28.19 133253 73 37240 94263 28.32 131503 74 37280 94305 28.33 131585 75 36026 93584 27.80 129610 76 36191 92806 28.06 128997 77 36762 92662 28.40 129424 78 36741 92498 28.43 129239 79 35966 91899 28.13 127865 80 35318 90569 28.06 125887 81 34813 90615 27.76 125428 82 33893 87990 27.81 121883 83 34513 88915 27.96 123428 84 34242 88393 27.92 122635 85 33903 87832 27.85 121735 86 32816 85244 27.80 118060 87 32147 85263 27.38 117410 88 32430 85027 27.61 117457 89 32233 82985 27.98 115218 90 31675 83879 27.41 115554 91 31640 81837 27.88 113477 92 30849 81782 27.39 112631 93 30833 81498 27.45 112331 94 30577 81272 27.34 111849 95 30305 79630 27.57 109935 96 29941 80319 27.15 110260 97 29049 77321 27.31 106370 98 27406 72262 27.50 99668 99 21599 57000 27.48 78599 100 28194 71759 28.21 99953 101 25378 71744 26.13 97122 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 138183 233128 37.21 371311 2 75926 224264 25.29 300190 3 34314 217342 13.64 251656 4 19612 218980 8.22 238592 5 13416 197390 6.36 210806 6 10552 187907 5.32 198459 7 9531 234230 3.91 243761 8 4327 253865 1.68 258192 9 3726 240585 1.53 244311 10 3724 236425 1.55 240149 11 3753 242058 1.53 245811 12 3771 240868 1.54 244639 13 3409 234894 1.43 238303 14 3135 233879 1.32 237014 15 3069 239713 1.26 242782 16 2660 241868 1.09 244528 17 2717 238437 1.13 241154 18 2594 238249 1.08 240843 19 2429 237848 1.01 240277 20 2510 247774 1.00 250284 21 2398 251300 0.95 253698 22 2441 248042 0.97 250483 23 2547 253472 0.99 256019 24 2456 252901 0.96 255357 25 2447 246485 0.98 248932 26 2737 249622 1.08 252359 27 2560 251405 1.01 253965 28 2420 249405 0.96 251825 29 2554 252162 1.00 254716 30 2407 255357 0.93 257764 31 2434 248584 0.97 251018 32 2541 251149 1.00 253690 33 2584 253380 1.01 255964 34 2483 248628 0.99 251111 35 2652 248581 1.06 251233 36 2622 250645 1.04 253267 37 2727 242247 1.11 244974 38 2607 247895 1.04 250502 39 2557 246729 1.03 249286 40 2496 245335 1.01 247831 41 2541 245603 1.02 248144 42 2523 245521 1.02 248044 43 2591 241502 1.06 244093 44 2507 244757 1.01 247264 45 2597 244692 1.05 247289 46 2603 241651 1.07 244254 47 2688 240683 1.10 243371 48 2752 245956 1.11 248708 49 2566 240567 1.06 243133 50 2788 239181 1.15 241969 51 2628 241203 1.08 243831 52 2703 241091 1.11 243794 53 2756 236446 1.15 239202 54 2920 240991 1.20 243911 55 2753 236819 1.15 239572 56 2742 238114 1.14 240856 57 2752 236136 1.15 238888 58 2659 233421 1.13 236080 59 2878 233928 1.22 236806 60 2680 234126 1.13 236806 61 2641 230446 1.13 233087 62 2863 231453 1.22 234316 63 2840 228876 1.23 231716 64 2803 228138 1.21 230941 65 2987 228398 1.29 231385 66 2749 224538 1.21 227287 67 2799 218405 1.27 221204 68 3001 221257 1.34 224258 69 2865 219801 1.29 222666 70 2849 215045 1.31 217894 71 2678 215241 1.23 217919 72 2774 215064 1.27 217838 73 2720 212914 1.26 215634 74 2764 210799 1.29 213563 75 2753 210227 1.29 212980 76 2681 205692 1.29 208373 77 2783 205877 1.33 208660 78 2727 203950 1.32 206677 79 2715 198745 1.35 201460 80 2591 199909 1.28 202500 81 2686 197070 1.34 199756 82 2605 193269 1.33 195874 83 2626 196764 1.32 199390 84 2754 196566 1.38 199320 85 2872 192552 1.47 195424 86 2706 191990 1.39 194696 87 2639 193265 1.35 195904 88 2947 188892 1.54 191839 89 2633 187559 1.38 190192 90 2613 186961 1.38 189574 91 2524 183846 1.35 186370 92 2683 184566 1.43 187249 93 2767 182460 1.49 185227 94 2690 178871 1.48 181561 95 2657 177337 1.48 179994 96 2632 175580 1.48 178212 97 2520 160518 1.55 163038 98 2304 147307 1.54 149611 99 1622 95351 1.67 96973 100 1703 96430 1.74 98133 101 3395 159924 2.08 163319 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 181812 339392 34.88 521204 2 90588 362301 20.00 452889 3 47943 403970 10.61 451913 4 41504 428599 8.83 470103 5 38401 486525 7.32 524926 6 31045 524381 5.59 555426 7 28283 657792 4.12 686075 8 15878 709483 2.19 725361 9 12277 659341 1.83 671618 10 11839 644201 1.80 656040 11 13231 649172 2.00 662403 12 11427 655816 1.71 667243 13 12578 664241 1.86 676819 14 13198 683411 1.89 696609 15 11506 704154 1.61 715660 16 11089 713012 1.53 724101 17 12666 718873 1.73 731539 18 10866 743389 1.44 754255 19 10976 756828 1.43 767804 20 12621 780882 1.59 793503 21 10914 782545 1.38 793459 22 11523 784351 1.45 795874 23 12611 782967 1.59 795578 24 10995 783715 1.38 794710 25 11653 786252 1.46 797905 26 12802 792825 1.59 805627 27 10843 795938 1.34 806781 28 10860 798503 1.34 809363 29 12433 795787 1.54 808220 30 10900 790201 1.36 801101 31 11295 782106 1.42 793401 32 12328 783063 1.55 795391 33 11003 782201 1.39 793204 34 11781 786153 1.48 797934 35 12547 779252 1.58 791799 36 11069 787122 1.39 798191 37 11328 778167 1.43 789495 38 12480 783303 1.57 795783 39 10717 777043 1.36 787760 40 10991 773546 1.40 784537 41 12453 777474 1.58 789927 42 11105 781122 1.40 792227 43 11670 771916 1.49 783586 44 12251 776798 1.55 789049 45 11011 768361 1.41 779372 46 11127 771096 1.42 782223 47 12137 766599 1.56 778736 48 10831 763766 1.40 774597 49 10987 755843 1.43 766830 50 12050 753739 1.57 765789 51 10638 746988 1.40 757626 52 11030 743468 1.46 754498 53 11942 738267 1.59 750209 54 10718 738200 1.43 748918 55 10870 729825 1.47 740695 56 11943 730791 1.61 742734 57 10451 734604 1.40 745055 58 10535 730915 1.42 741450 59 12144 732087 1.63 744231 60 10307 727344 1.40 737651 61 10774 721849 1.47 732623 62 11695 713117 1.61 724812 63 10148 709190 1.41 719338 64 10807 703203 1.51 714010 65 11537 699700 1.62 711237 66 10237 696077 1.45 706314 67 10266 692367 1.46 702633 68 11386 689618 1.62 701004 69 9734 686644 1.40 696378 70 10060 680439 1.46 690499 71 11120 677809 1.61 688929 72 9652 675107 1.41 684759 73 10334 662887 1.54 673221 74 10910 662636 1.62 673546 75 9599 660130 1.43 669729 76 9640 656419 1.45 666059 77 10970 649602 1.66 660572 78 9272 644376 1.42 653648 79 9455 642787 1.45 652242 80 10496 636093 1.62 646589 81 9501 628865 1.49 638366 82 9850 621736 1.56 631586 83 10651 621816 1.68 632467 84 9371 613803 1.50 623174 85 9820 604896 1.60 614716 86 10256 598605 1.68 608861 87 9102 594492 1.51 603594 88 9642 589670 1.61 599312 89 9980 583172 1.68 593152 90 8739 581776 1.48 590515 91 9134 572879 1.57 582013 92 9606 569445 1.66 579051 93 8567 563893 1.50 572460 94 8799 555697 1.56 564496 95 9388 548564 1.68 557952 96 8161 536526 1.50 544687 97 8046 522254 1.52 530300 98 8297 484827 1.68 493124 99 5216 335839 1.53 341055 100 5539 297961 1.83 303500 101 8476 492240 1.69 500716 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 100292 105829 48.66 206121 2 83117 87125 48.82 170242 3 90659 98617 47.90 189276 4 82337 110403 42.72 192740 5 37375 143309 20.69 180684 6 22639 77995 22.50 100634 7 20088 81678 19.74 101766 8 20868 74764 21.82 95632 9 18654 65712 22.11 84366 10 19594 72283 21.33 91877 11 21515 69866 23.54 91381 12 20658 66905 23.59 87563 13 20989 65861 24.17 86850 14 22096 67404 24.69 89500 15 21937 61858 26.18 83795 16 20073 59116 25.35 79189 17 23621 64483 26.81 88104 18 22968 62457 26.89 85425 19 22832 61648 27.03 84480 20 20607 57669 26.33 78276 21 21836 56966 27.71 78802 22 21290 57696 26.95 78986 23 20455 55900 26.79 76355 24 18647 52657 26.15 71304 25 21090 55446 27.56 76536 26 19156 52501 26.73 71657 27 20631 53108 27.98 73739 28 18951 50904 27.13 69855 29 19467 52705 26.97 72172 30 18965 49343 27.76 68308 31 18124 50069 26.58 68193 32 17751 46820 27.49 64571 33 20435 48536 29.63 68971 34 19161 50649 27.45 69810 35 22585 54624 29.25 77209 36 19243 48036 28.60 67279 37 19634 49320 28.47 68954 38 17303 46992 26.91 64295 39 18247 46317 28.26 64564 40 19960 45805 30.35 65765 41 17537 45331 27.89 62868 42 17652 46864 27.36 64516 43 17193 45118 27.59 62311 44 16339 44286 26.95 60625 45 20227 48495 29.43 68722 46 15856 40996 27.89 56852 47 16286 41569 28.15 57855 48 16159 42045 27.76 58204 49 15733 41701 27.39 57434 50 15071 39637 27.55 54708 51 15039 38696 27.99 53735 52 14786 39586 27.19 54372 53 15420 38781 28.45 54201 54 14721 39172 27.32 53893 55 15099 38832 28.00 53931 56 14141 37460 27.40 51601 57 14700 38528 27.62 53228 58 14330 37553 27.62 51883 59 14023 35233 28.47 49256 60 14197 35878 28.35 50075 61 12805 34084 27.31 46889 62 12747 33781 27.40 46528 63 13887 33704 29.18 47591 64 12745 33387 27.63 46132 65 12663 31901 28.42 44564 66 13197 33001 28.57 46198 67 12469 33836 26.93 46305 68 13707 34403 28.49 48110 69 12020 30731 28.12 42751 70 11626 30553 27.56 42179 71 11797 29904 28.29 41701 72 11562 29103 28.43 40665 73 11509 29924 27.78 41433 74 10199 28442 26.39 38641 75 10387 28425 26.76 38812 76 10965 27677 28.38 38642 77 10376 27856 27.14 38232 78 10405 27619 27.36 38024 79 10156 27243 27.16 37399 80 10064 26698 27.38 36762 81 9761 26672 26.79 36433 82 9901 26955 26.86 36856 83 9970 25656 27.99 35626 84 11112 28136 28.31 39248 85 9443 25453 27.06 34896 86 9259 25220 26.85 34479 87 9216 24238 27.55 33454 88 9382 23935 28.16 33317 89 9738 25402 27.71 35140 90 9724 24714 28.24 34438 91 8898 23914 27.12 32812 92 8629 23280 27.04 31909 93 8865 22825 27.97 31690 94 9130 23563 27.93 32693 95 8712 22895 27.56 31607 96 8713 22830 27.62 31543 97 9338 24233 27.82 33571 98 8303 21055 28.28 29358 99 7459 0 100.00 7459 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 25667 133517 16.12 159184 2 25971 135793 16.05 161764 3 23233 134300 14.75 157533 4 24845 143927 14.72 168772 5 2840 260637 1.08 263477 6 2185 323612 0.67 325797 7 1312 179257 0.73 180569 8 1405 191760 0.73 193165 9 1200 157510 0.76 158710 10 1240 150857 0.82 152097 11 1737 205485 0.84 207222 12 1290 162201 0.79 163491 13 1284 158152 0.81 159436 14 1370 152106 0.89 153476 15 1282 147165 0.86 148447 16 1122 136451 0.82 137573 17 1309 145604 0.89 146913 18 1294 129346 0.99 130640 19 1218 127195 0.95 128413 20 1107 126613 0.87 127720 21 1302 120404 1.07 121706 22 1199 131531 0.90 132730 23 1210 130426 0.92 131636 24 1013 117413 0.86 118426 25 1092 118332 0.91 119424 26 1169 123829 0.94 124998 27 1078 115979 0.92 117057 28 975 110516 0.87 111491 29 1137 118875 0.95 120012 30 1030 114404 0.89 115434 31 995 108919 0.91 109914 32 1003 110983 0.90 111986 33 1134 130448 0.86 131582 34 1008 108512 0.92 109520 35 1003 113584 0.88 114587 36 977 112681 0.86 113658 37 900 102905 0.87 103805 38 1009 110001 0.91 111010 39 931 100649 0.92 101580 40 876 100049 0.87 100925 41 818 97561 0.83 98379 42 937 92823 1.00 93760 43 855 95772 0.88 96627 44 854 94774 0.89 95628 45 781 89830 0.86 90611 46 841 89712 0.93 90553 47 859 92216 0.92 93075 48 835 88024 0.94 88859 49 797 92550 0.85 93347 50 842 88481 0.94 89323 51 785 83865 0.93 84650 52 795 81282 0.97 82077 53 858 91513 0.93 92371 54 722 83679 0.86 84401 55 730 82288 0.88 83018 56 811 82298 0.98 83109 57 780 78816 0.98 79596 58 687 76710 0.89 77397 59 709 80122 0.88 80831 60 780 77614 0.99 78394 61 758 77100 0.97 77858 62 770 78729 0.97 79499 63 724 77525 0.93 78249 64 636 73004 0.86 73640 65 702 74857 0.93 75559 66 634 69629 0.90 70263 67 673 74940 0.89 75613 68 636 72184 0.87 72820 69 670 71569 0.93 72239 70 682 71053 0.95 71735 71 650 72802 0.88 73452 72 619 67556 0.91 68175 73 571 66023 0.86 66594 74 563 68733 0.81 69296 75 539 65240 0.82 65779 76 523 63423 0.82 63946 77 590 66847 0.87 67437 78 566 61403 0.91 61969 79 594 62005 0.95 62599 80 538 60575 0.88 61113 81 519 58800 0.87 59319 82 540 57802 0.93 58342 83 553 59122 0.93 59675 84 538 56479 0.94 57017 85 573 63299 0.90 63872 86 526 56663 0.92 57189 87 507 56948 0.88 57455 88 485 54152 0.89 54637 89 534 56176 0.94 56710 90 530 55645 0.94 56175 91 523 57969 0.89 58492 92 524 54176 0.96 54700 93 551 52301 1.04 52852 94 474 51214 0.92 51688 95 533 52925 1.00 53458 96 485 49457 0.97 49942 97 462 49566 0.92 50028 98 383 49626 0.77 50009 99 277 0 100.00 277 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 33808 177764 15.98 211572 2 27114 144882 15.76 171996 3 27396 147178 15.69 174574 4 26543 140481 15.89 167024 5 5190 284986 1.79 290176 6 5093 384995 1.31 390088 7 5876 526985 1.10 532861 8 5950 514309 1.14 520259 9 5880 483736 1.20 489616 10 5747 499827 1.14 505574 11 5909 490227 1.19 496136 12 5773 458759 1.24 464532 13 5687 473550 1.19 479237 14 5729 473039 1.20 478768 15 5631 485338 1.15 490969 16 5420 467040 1.15 472460 17 5602 464081 1.19 469683 18 5431 461549 1.16 466980 19 5061 427169 1.17 432230 20 5342 453984 1.16 459326 21 5228 430953 1.20 436181 22 5140 412492 1.23 417632 23 4950 405968 1.20 410918 24 4672 391551 1.18 396223 25 4937 390090 1.25 395027 26 4858 388233 1.24 393091 27 5112 417630 1.21 422742 28 4749 392313 1.20 397062 29 4695 383003 1.21 387698 30 4831 374654 1.27 379485 31 4540 367834 1.22 372374 32 4511 355986 1.25 360497 33 4422 352189 1.24 356611 34 4448 349952 1.26 354400 35 4966 363107 1.35 368073 36 4267 355696 1.19 359963 37 4378 353838 1.22 358216 38 4439 372160 1.18 376599 39 4247 337919 1.24 342166 40 4281 357192 1.18 361473 41 4176 334363 1.23 338539 42 4173 344142 1.20 348315 43 4122 324969 1.25 329091 44 3980 320374 1.23 324354 45 4110 321810 1.26 325920 46 3922 325597 1.19 329519 47 3930 317372 1.22 321302 48 3876 310759 1.23 314635 49 3814 318198 1.18 322012 50 3643 309488 1.16 313131 51 3537 302138 1.16 305675 52 3536 289651 1.21 293187 53 3494 287690 1.20 291184 54 3358 280772 1.18 284130 55 3456 292499 1.17 295955 56 3409 280586 1.20 283995 57 3426 290248 1.17 293674 58 3245 278426 1.15 281671 59 3249 267704 1.20 270953 60 3344 277667 1.19 281011 61 3178 263504 1.19 266682 62 3247 262100 1.22 265347 63 3088 263612 1.16 266700 64 3096 254459 1.20 257555 65 3037 258566 1.16 261603 66 3017 248769 1.20 251786 67 2850 249127 1.13 251977 68 2998 257130 1.15 260128 69 3009 249258 1.19 252267 70 2895 238471 1.20 241366 71 2784 236478 1.16 239262 72 2838 235799 1.19 238637 73 2882 232649 1.22 235531 74 2682 233334 1.14 236016 75 2743 231504 1.17 234247 76 2558 222420 1.14 224978 77 2788 220227 1.25 223015 78 2645 221170 1.18 223815 79 2639 225620 1.16 228259 80 2601 217305 1.18 219906 81 2645 217616 1.20 220261 82 2578 213375 1.19 215953 83 2540 211669 1.19 214209 84 2566 209434 1.21 212000 85 2443 207255 1.17 209698 86 2430 205699 1.17 208129 87 2402 203980 1.16 206382 88 2300 196781 1.16 199081 89 2329 195856 1.18 198185 90 2381 194259 1.21 196640 91 2352 193861 1.20 196213 92 2225 190579 1.15 192804 93 2276 188143 1.20 190419 94 2186 187660 1.15 189846 95 2201 184032 1.18 186233 96 2089 180028 1.15 182117 97 1929 179154 1.07 181083 98 1720 171467 0.99 173187 99 1244 0 100.00 1244