EPI-230_S37_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 7282444 lines in total Total number of methylation call strings processed: 14564888 Final Cytosine Methylation Report ================================= Total number of C's analysed: 139950493 Total methylated C's in CpG context: 5977998 Total methylated C's in CHG context: 651184 Total methylated C's in CHH context: 1768421 Total C to T conversions in CpG context: 13704103 Total C to T conversions in CHG context: 28593233 Total C to T conversions in CHH context: 89255554 C methylated in CpG context: 30.4% C methylated in CHG context: 2.2% C methylated in CHH context: 1.9%