EPI-227_S35_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 4209352 lines in total Total number of methylation call strings processed: 8418704 Final Cytosine Methylation Report ================================= Total number of C's analysed: 86316145 Total methylated C's in CpG context: 3751343 Total methylated C's in CHG context: 464615 Total methylated C's in CHH context: 1765502 Total C to T conversions in CpG context: 8102850 Total C to T conversions in CHG context: 17545411 Total C to T conversions in CHH context: 54686424 C methylated in CpG context: 31.6% C methylated in CHG context: 2.6% C methylated in CHH context: 3.1%