EPI-226_S34_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 3438115 lines in total Total number of methylation call strings processed: 6876230 Final Cytosine Methylation Report ================================= Total number of C's analysed: 74285747 Total methylated C's in CpG context: 3347989 Total methylated C's in CHG context: 403265 Total methylated C's in CHH context: 1509605 Total C to T conversions in CpG context: 6780487 Total C to T conversions in CHG context: 15120311 Total C to T conversions in CHH context: 47124090 C methylated in CpG context: 33.1% C methylated in CHG context: 2.6% C methylated in CHH context: 3.1%