/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-215_S31_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-215_S31_L004_R2_001_val_2.fq.gz
Data processed at 12:47 on 2019-08-08
Alignment Stats
Sequence pairs analysed in total
21150005
Paired-end alignments with a unique best hit
8898558
Pairs without alignments under any condition
9932657
Pairs that did not map uniquely
2318790
Genomic sequence context not extractable (edges of chromosomes)
1
Cytosine Methylation
Total C's analysed
255324646
Methylated C's in CpG context
11359862
Methylated C's in CHG context
1449582
Methylated C's in CHH context
3434042
Methylated C's in Unknown context
63236
Unmethylated C's in CpG context
25363136
Unmethylated C's in CHG context
54116553
Unmethylated C's in CHH context
159601471
Unmethylated C's in Unknown context
546779
Percentage methylation (CpG context)
30.9%
Percentage methylation (CHG context)
2.6%
Percentage methylation (CHH context)
2.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4386310
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4512247
original bottom strand
Deduplication
Alignments analysed
8898557
Unique alignments
6392902
Duplicates removed
2505655
Duplicated alignments were found at 1529678 different positions