/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-208_S28_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-208_S28_L004_R2_001_val_2.fq.gz
Data processed at 12:47 on 2019-08-08
Alignment Stats
Sequence pairs analysed in total
29146503
Paired-end alignments with a unique best hit
11240949
Pairs without alignments under any condition
14550345
Pairs that did not map uniquely
3355209
Genomic sequence context not extractable (edges of chromosomes)
4
Cytosine Methylation
Total C's analysed
311618922
Methylated C's in CpG context
11403965
Methylated C's in CHG context
1731400
Methylated C's in CHH context
3248557
Methylated C's in Unknown context
54196
Unmethylated C's in CpG context
33743386
Unmethylated C's in CHG context
67489106
Unmethylated C's in CHH context
194002508
Unmethylated C's in Unknown context
680321
Percentage methylation (CpG context)
25.3%
Percentage methylation (CHG context)
2.5%
Percentage methylation (CHH context)
1.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5552476
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5688469
original bottom strand
Deduplication
Alignments analysed
11240945
Unique alignments
8641341
Duplicates removed
2599604
Duplicated alignments were found at 1452536 different positions