File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated chgs	Unmethylated chgs	Methylated CHHs	Unmethylated CHHs
EPI-175_S14_L003_R1_001_val_1_bismark_bt2_pe.bam	24654280	10209529	12327982	2116768	1	2284909	7924620	169230320	6854838	16729782	805593	34594121	2153742	108092244
EPI-176_S15_L003_R1_001_val_1_bismark_bt2_pe.bam	36345555	13724717	19810124	2810707	7	3630031	10094686	212732771	8409431	21389527	937010	42655847	2366691	136974265
EPI-181_S16_L003_R1_001_val_1_bismark_bt2_pe.bam	27212918	10790980	14282015	2139922	1	2580715	8210265	182131746	7773669	17313389	910797	37265101	2287864	116580926
EPI-182_S17_L003_R1_001_val_1_bismark_bt2_pe.bam	31499315	13143700	15672601	2683014	0	2877178	10266522	222524486	8754862	21458168	1102130	44943458	2694418	143571450
EPI-184_S18_L003_R1_001_val_1_bismark_bt2_pe.bam	20689148	8444728	10305796	1938622	2	2148266	6296462	128398540	5213255	12567730	627120	26364706	2204316	81421413
EPI-185_S19_L003_R1_001_val_1_bismark_bt2_pe.bam	11003725	4103253	6008199	892273	0	1336980	2766273	57532394	2287343	5639671	323890	11658279	1768982	35854229
EPI-187_S20_L003_R1_001_val_1_bismark_bt2_pe.bam	22734395	9655530	10981695	2097166	4	2556625	7098905	150742463	6936899	13822954	814250	31050905	2156222	95961233
EPI-188_S21_L003_R1_001_val_1_bismark_bt2_pe.bam	21488138	8423410	10776872	2287855	1	2230577	6192833	115906900	4644294	11620008	619856	23551619	1638581	73832542
EPI-193_S22_L003_R1_001_val_1_bismark_bt2_pe.bam	26770469	10697352	13242455	2830662	0	2526429	8170923	156322050	6612365	15198462	770831	31981857	2168983	99589552
EPI-194_S23_L003_R1_001_val_1_bismark_bt2_pe.bam	27459153	11624042	13557404	2277707	0	2623096	9000946	203726589	8959141	18995825	996952	41660215	2787951	130326505
EPI-199_S24_L003_R1_001_val_1_bismark_bt2_pe.bam	15913069	6267321	8113691	1532057	0	1900244	4367077	88024093	4047323	8070663	479419	17975035	1871691	55579962
EPI-200_S25_L003_R1_001_val_1_bismark_bt2_pe.bam	25100695	10396121	11933311	2771262	1	2895134	7500987	143389134	6473128	13251440	794893	29375321	2249885	91244467