/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-199_S24_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-199_S24_L003_R2_001_val_2.fq.gz
Data processed at 08:15 on 2019-08-08
Alignment Stats
Sequence pairs analysed in total
15913069
Paired-end alignments with a unique best hit
6267321
Pairs without alignments under any condition
8113691
Pairs that did not map uniquely
1532057
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
181304638
Methylated C's in CpG context
8091308
Methylated C's in CHG context
993527
Methylated C's in CHH context
3522698
Methylated C's in Unknown context
63898
Unmethylated C's in CpG context
17646077
Unmethylated C's in CHG context
38210008
Unmethylated C's in CHH context
112841020
Unmethylated C's in Unknown context
386634
Percentage methylation (CpG context)
31.4%
Percentage methylation (CHG context)
2.5%
Percentage methylation (CHH context)
3.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3085988
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
3181333
original bottom strand
Deduplication
Alignments analysed
6267321
Unique alignments
4367077
Duplicates removed
1900244
Duplicated alignments were found at 1204077 different positions
