EPI-194_S23_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 9000946 lines in total Total number of methylation call strings processed: 18001892 Final Cytosine Methylation Report ================================= Total number of C's analysed: 203726589 Total methylated C's in CpG context: 8959141 Total methylated C's in CHG context: 996952 Total methylated C's in CHH context: 2787951 Total C to T conversions in CpG context: 18995825 Total C to T conversions in CHG context: 41660215 Total C to T conversions in CHH context: 130326505 C methylated in CpG context: 32.0% C methylated in CHG context: 2.3% C methylated in CHH context: 2.1%