EPI-188_S21_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 6192833 lines in total Total number of methylation call strings processed: 12385666 Final Cytosine Methylation Report ================================= Total number of C's analysed: 115906900 Total methylated C's in CpG context: 4644294 Total methylated C's in CHG context: 619856 Total methylated C's in CHH context: 1638581 Total C to T conversions in CpG context: 11620008 Total C to T conversions in CHG context: 23551619 Total C to T conversions in CHH context: 73832542 C methylated in CpG context: 28.6% C methylated in CHG context: 2.6% C methylated in CHH context: 2.2%