CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 126360 199469 38.78 325829 2 119943 221584 35.12 341527 3 116771 200817 36.77 317588 4 121729 167956 42.02 289685 5 119749 146691 44.94 266440 6 122253 121505 50.15 243758 7 137868 117165 54.06 255033 8 66085 136706 32.59 202791 9 58999 126411 31.82 185410 10 58852 120703 32.78 179555 11 60872 124097 32.91 184969 12 59551 125157 32.24 184708 13 58473 127919 31.37 186392 14 56299 127972 30.55 184271 15 55150 129445 29.88 184595 16 51649 128178 28.72 179827 17 49219 125228 28.21 174447 18 50705 127067 28.52 177772 19 49613 127905 27.95 177518 20 50823 129920 28.12 180743 21 50893 130358 28.08 181251 22 49831 128731 27.91 178562 23 49642 127732 27.99 177374 24 48923 128057 27.64 176980 25 48134 126403 27.58 174537 26 48131 126087 27.63 174218 27 48578 129303 27.31 177881 28 49546 129338 27.70 178884 29 48289 128947 27.25 177236 30 47195 127487 27.02 174682 31 48226 126663 27.58 174889 32 47418 123755 27.70 171173 33 47526 125240 27.51 172766 34 48448 125053 27.92 173501 35 47396 124799 27.52 172195 36 46892 126154 27.10 173046 37 46034 123151 27.21 169185 38 44798 122737 26.74 167535 39 46894 125200 27.25 172094 40 46331 123456 27.29 169787 41 45798 123993 26.97 169791 42 47271 125679 27.33 172950 43 46400 123696 27.28 170096 44 45967 122793 27.24 168760 45 46529 122797 27.48 169326 46 46898 123399 27.54 170297 47 46157 120936 27.62 167093 48 45215 121354 27.14 166569 49 46732 121377 27.80 168109 50 46262 122753 27.37 169015 51 46149 122139 27.42 168288 52 45970 124161 27.02 170131 53 45112 118940 27.50 164052 54 43823 117815 27.11 161638 55 44184 116142 27.56 160326 56 43789 115002 27.58 158791 57 43964 116145 27.46 160109 58 44475 116379 27.65 160854 59 43952 115055 27.64 159007 60 42981 115663 27.09 158644 61 43287 113316 27.64 156603 62 41822 113873 26.86 155695 63 41707 112596 27.03 154303 64 41154 112105 26.85 153259 65 41967 112012 27.26 153979 66 42735 111880 27.64 154615 67 41634 110041 27.45 151675 68 41252 109656 27.34 150908 69 40502 108795 27.13 149297 70 40434 108365 27.17 148799 71 39305 106709 26.92 146014 72 39312 105765 27.10 145077 73 38742 104802 26.99 143544 74 38730 103554 27.22 142284 75 37500 103477 26.60 140977 76 37322 102488 26.69 139810 77 37881 101453 27.19 139334 78 38372 102207 27.30 140579 79 37345 100317 27.13 137662 80 36520 100306 26.69 136826 81 36207 99827 26.62 136034 82 35372 97726 26.58 133098 83 35890 98277 26.75 134167 84 35561 97926 26.64 133487 85 35417 96890 26.77 132307 86 34445 95420 26.52 129865 87 33714 93704 26.46 127418 88 33439 92786 26.49 126225 89 33109 92624 26.33 125733 90 33303 92808 26.41 126111 91 32470 90790 26.34 123260 92 32277 90433 26.30 122710 93 31949 90619 26.07 122568 94 31508 88981 26.15 120489 95 31175 87955 26.17 119130 96 31362 88248 26.22 119610 97 30246 84906 26.27 115152 98 28464 80454 26.13 108918 99 22499 63051 26.30 85550 100 29167 79927 26.74 109094 101 26227 79761 24.75 105988 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 158051 271020 36.84 429071 2 88369 259182 25.43 347551 3 37421 249795 13.03 287216 4 20221 246410 7.58 266631 5 13607 221802 5.78 235409 6 11503 209963 5.19 221466 7 9118 262997 3.35 272115 8 4236 287429 1.45 291665 9 3605 271405 1.31 275010 10 3546 260459 1.34 264005 11 3604 261111 1.36 264715 12 3540 258878 1.35 262418 13 3136 250864 1.23 254000 14 2991 251007 1.18 253998 15 2982 257125 1.15 260107 16 2756 257361 1.06 260117 17 2515 254312 0.98 256827 18 2547 251925 1.00 254472 19 2493 253674 0.97 256167 20 2600 265141 0.97 267741 21 2594 267984 0.96 270578 22 2593 265300 0.97 267893 23 2708 268963 1.00 271671 24 2666 269781 0.98 272447 25 2791 262123 1.05 264914 26 2831 264497 1.06 267328 27 2636 268736 0.97 271372 28 2464 266500 0.92 268964 29 2668 268899 0.98 271567 30 2447 271351 0.89 273798 31 2522 264505 0.94 267027 32 2738 267554 1.01 270292 33 2604 270279 0.95 272883 34 2625 265945 0.98 268570 35 2817 264810 1.05 267627 36 2676 266548 0.99 269224 37 2580 259577 0.98 262157 38 2742 264296 1.03 267038 39 2610 262747 0.98 265357 40 2582 262313 0.97 264895 41 2625 261696 0.99 264321 42 2628 260505 1.00 263133 43 2584 257748 0.99 260332 44 2652 262965 1.00 265617 45 2774 260991 1.05 263765 46 2822 258489 1.08 261311 47 2918 258325 1.12 261243 48 2801 262688 1.06 265489 49 2689 257077 1.04 259766 50 2799 255666 1.08 258465 51 2824 258178 1.08 261002 52 2770 256566 1.07 259336 53 2911 252905 1.14 255816 54 2859 256220 1.10 259079 55 2856 252731 1.12 255587 56 2941 254472 1.14 257413 57 2863 252282 1.12 255145 58 2867 249605 1.14 252472 59 3103 250929 1.22 254032 60 2863 251258 1.13 254121 61 2972 247458 1.19 250430 62 3042 247319 1.22 250361 63 2968 245435 1.19 248403 64 2936 245802 1.18 248738 65 3390 245077 1.36 248467 66 3033 240567 1.25 243600 67 3143 234890 1.32 238033 68 3132 237080 1.30 240212 69 2862 235531 1.20 238393 70 2916 231172 1.25 234088 71 2907 230898 1.24 233805 72 2914 230051 1.25 232965 73 2825 227254 1.23 230079 74 3058 225824 1.34 228882 75 2817 224820 1.24 227637 76 2985 218361 1.35 221346 77 2954 220694 1.32 223648 78 2761 217393 1.25 220154 79 2989 211692 1.39 214681 80 2799 212477 1.30 215276 81 2728 209948 1.28 212676 82 2811 207625 1.34 210436 83 2866 209528 1.35 212394 84 2973 209104 1.40 212077 85 2832 206124 1.36 208956 86 2862 205776 1.37 208638 87 3220 205875 1.54 209095 88 3598 197395 1.79 200993 89 2826 200446 1.39 203272 90 2873 198957 1.42 201830 91 2877 196763 1.44 199640 92 2814 198321 1.40 201135 93 2941 195449 1.48 198390 94 2849 191152 1.47 194001 95 2746 188931 1.43 191677 96 2959 187207 1.56 190166 97 2745 170817 1.58 173562 98 2442 157009 1.53 159451 99 1638 102661 1.57 104299 100 1875 103541 1.78 105416 101 3744 170865 2.14 174609 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 184287 352331 34.34 536618 2 89161 377011 19.13 466172 3 46658 430672 9.77 477330 4 39651 458059 7.97 497710 5 37888 539548 6.56 577436 6 30483 594165 4.88 624648 7 26702 746246 3.45 772948 8 16496 813540 1.99 830036 9 12677 744970 1.67 757647 10 12481 720049 1.70 732530 11 14561 720594 1.98 735155 12 12170 726002 1.65 738172 13 13265 739573 1.76 752838 14 14503 754224 1.89 768727 15 12502 773273 1.59 785775 16 12089 782586 1.52 794675 17 14175 789326 1.76 803501 18 12247 816607 1.48 828854 19 12550 834520 1.48 847070 20 14280 858325 1.64 872605 21 12338 860169 1.41 872507 22 13057 862755 1.49 875812 23 14609 864486 1.66 879095 24 12424 865468 1.42 877892 25 13996 866227 1.59 880223 26 14600 874186 1.64 888786 27 12955 880910 1.45 893865 28 12404 882346 1.39 894750 29 14374 880437 1.61 894811 30 12472 872648 1.41 885120 31 12789 863170 1.46 875959 32 14813 862730 1.69 877543 33 12305 865628 1.40 877933 34 13431 867909 1.52 881340 35 14340 858797 1.64 873137 36 12791 869116 1.45 881907 37 12140 860306 1.39 872446 38 14042 863573 1.60 877615 39 12181 853644 1.41 865825 40 12380 851894 1.43 864274 41 14109 857131 1.62 871240 42 12842 860186 1.47 873028 43 13505 848956 1.57 862461 44 14066 856112 1.62 870178 45 12503 846774 1.46 859277 46 13029 846057 1.52 859086 47 13780 843172 1.61 856952 48 12150 840917 1.42 853067 49 12507 832813 1.48 845320 50 13760 829800 1.63 843560 51 11827 821069 1.42 832896 52 12689 817428 1.53 830117 53 13625 809660 1.65 823285 54 12146 810080 1.48 822226 55 12530 805582 1.53 818112 56 13627 803504 1.67 817131 57 11854 812549 1.44 824403 58 12397 805741 1.52 818138 59 13692 809133 1.66 822825 60 11726 799637 1.45 811363 61 12450 793079 1.55 805529 62 13273 784060 1.66 797333 63 11647 779987 1.47 791634 64 12676 774964 1.61 787640 65 13097 769539 1.67 782636 66 11580 764706 1.49 776286 67 11943 759991 1.55 771934 68 13046 757592 1.69 770638 69 11307 752165 1.48 763472 70 11503 746591 1.52 758094 71 12722 742651 1.68 755373 72 11222 739647 1.49 750869 73 11980 728875 1.62 740855 74 12456 728170 1.68 740626 75 10998 722863 1.50 733861 76 12167 716899 1.67 729066 77 12490 712434 1.72 724924 78 10810 706872 1.51 717682 79 11402 700582 1.60 711984 80 12076 698213 1.70 710289 81 10874 688502 1.55 699376 82 11373 679791 1.65 691164 83 12208 680531 1.76 692739 84 11236 672393 1.64 683629 85 10678 664784 1.58 675462 86 11439 655915 1.71 667354 87 11438 649548 1.73 660986 88 13030 633632 2.01 646662 89 11402 639180 1.75 650582 90 10106 639002 1.56 649108 91 10315 629678 1.61 639993 92 10974 627227 1.72 638201 93 9745 619445 1.55 629190 94 10036 612403 1.61 622439 95 10972 603559 1.79 614531 96 9514 593061 1.58 602575 97 9492 576543 1.62 586035 98 9662 535269 1.77 544931 99 6143 369065 1.64 375208 100 6549 330613 1.94 337162 101 9892 540815 1.80 550707 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 99943 111012 47.38 210955 2 86676 95255 47.64 181931 3 95984 108765 46.88 204749 4 87677 123273 41.56 210950 5 39042 160184 19.60 199226 6 24071 86166 21.84 110237 7 20889 90548 18.75 111437 8 21447 83777 20.38 105224 9 19205 74364 20.52 93569 10 20995 81193 20.55 102188 11 22426 78521 22.22 100947 12 21552 74764 22.38 96316 13 22209 73333 23.25 95542 14 23706 74471 24.15 98177 15 22949 69230 24.90 92179 16 21605 66227 24.60 87832 17 25347 71717 26.11 97064 18 24815 70099 26.14 94914 19 23758 67677 25.98 91435 20 21668 65019 25.00 86687 21 23240 63703 26.73 86943 22 22672 64928 25.88 87600 23 21619 62644 25.66 84263 24 20387 59203 25.62 79590 25 22567 62611 26.49 85178 26 20644 59134 25.88 79778 27 21875 59964 26.73 81839 28 20350 57607 26.10 77957 29 21034 59644 26.07 80678 30 20203 55552 26.67 75755 31 19311 55611 25.77 74922 32 18907 52924 26.32 71831 33 21088 54572 27.87 75660 34 20125 56056 26.42 76181 35 23597 59881 28.27 83478 36 20023 53549 27.22 73572 37 20531 54630 27.32 75161 38 18514 52026 26.25 70540 39 19220 52257 26.89 71477 40 20466 51496 28.44 71962 41 18289 50982 26.40 69271 42 18330 51418 26.28 69748 43 18125 50097 26.57 68222 44 17205 49329 25.86 66534 45 20823 53102 28.17 73925 46 16770 45824 26.79 62594 47 17006 46032 26.98 63038 48 17182 46933 26.80 64115 49 16635 46571 26.32 63206 50 15765 43958 26.40 59723 51 15651 43405 26.50 59056 52 15855 44404 26.31 60259 53 16071 42726 27.33 58797 54 16108 43283 27.12 59391 55 16093 43146 27.17 59239 56 14756 41190 26.38 55946 57 15484 42237 26.83 57721 58 15045 40892 26.90 55937 59 14610 39049 27.23 53659 60 14690 39637 27.04 54327 61 13334 38438 25.76 51772 62 13534 37876 26.33 51410 63 14514 37227 28.05 51741 64 13602 36833 26.97 50435 65 13274 35384 27.28 48658 66 13816 36277 27.58 50093 67 13059 37404 25.88 50463 68 14124 37840 27.18 51964 69 12649 33758 27.26 46407 70 12315 33706 26.76 46021 71 12677 33108 27.69 45785 72 11844 32600 26.65 44444 73 12010 33138 26.60 45148 74 10934 31643 25.68 42577 75 11135 30937 26.47 42072 76 11365 30535 27.12 41900 77 11225 30105 27.16 41330 78 11044 30651 26.49 41695 79 10552 29984 26.03 40536 80 10512 29661 26.17 40173 81 10247 29025 26.09 39272 82 10698 29458 26.64 40156 83 10545 28197 27.22 38742 84 11370 30072 27.44 41442 85 10141 27702 26.80 37843 86 9960 27453 26.62 37413 87 9717 26760 26.64 36477 88 9686 26901 26.47 36587 89 10200 27311 27.19 37511 90 10308 26937 27.68 37245 91 9663 25895 27.18 35558 92 9269 25367 26.76 34636 93 9404 25439 26.99 34843 94 9467 25543 27.04 35010 95 9373 24958 27.30 34331 96 9119 25038 26.70 34157 97 9801 26170 27.25 35971 98 8741 23055 27.49 31796 99 7740 0 100.00 7740 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 28819 143343 16.74 172162 2 29646 146513 16.83 176159 3 27040 147675 15.48 174715 4 28692 155047 15.62 183739 5 2921 289120 1.00 292041 6 2296 353138 0.65 355434 7 1345 195244 0.68 196589 8 1476 204490 0.72 205966 9 1279 171604 0.74 172883 10 1257 164402 0.76 165659 11 1713 216398 0.79 218111 12 1396 174889 0.79 176285 13 1340 172442 0.77 173782 14 1380 165656 0.83 167036 15 1409 159231 0.88 160640 16 1116 148367 0.75 149483 17 1403 156686 0.89 158089 18 1409 141438 0.99 142847 19 1184 138463 0.85 139647 20 1149 136629 0.83 137778 21 1385 131321 1.04 132706 22 1170 140900 0.82 142070 23 1213 140752 0.85 141965 24 1095 127187 0.85 128282 25 1082 128395 0.84 129477 26 1212 134308 0.89 135520 27 1112 127363 0.87 128475 28 996 120172 0.82 121168 29 1024 127299 0.80 128323 30 1064 124213 0.85 125277 31 1031 118341 0.86 119372 32 959 120300 0.79 121259 33 1069 139107 0.76 140176 34 962 117823 0.81 118785 35 998 121327 0.82 122325 36 1030 120683 0.85 121713 37 987 111468 0.88 112455 38 995 116002 0.85 116997 39 970 109400 0.88 110370 40 964 109110 0.88 110074 41 916 104936 0.87 105852 42 925 100085 0.92 101010 43 885 103491 0.85 104376 44 822 102140 0.80 102962 45 879 96888 0.90 97767 46 801 96371 0.82 97172 47 810 98656 0.81 99466 48 875 95505 0.91 96380 49 864 98630 0.87 99494 50 880 94373 0.92 95253 51 798 90436 0.87 91234 52 815 88270 0.91 89085 53 868 97767 0.88 98635 54 780 90097 0.86 90877 55 762 88493 0.85 89255 56 789 89102 0.88 89891 57 811 84930 0.95 85741 58 776 82849 0.93 83625 59 766 85671 0.89 86437 60 892 83419 1.06 84311 61 723 82633 0.87 83356 62 764 83982 0.90 84746 63 761 83188 0.91 83949 64 641 78028 0.81 78669 65 695 79828 0.86 80523 66 641 75291 0.84 75932 67 741 79920 0.92 80661 68 647 77371 0.83 78018 69 650 77063 0.84 77713 70 639 76334 0.83 76973 71 674 77277 0.86 77951 72 644 72014 0.89 72658 73 627 71519 0.87 72146 74 662 73080 0.90 73742 75 582 70750 0.82 71332 76 622 67871 0.91 68493 77 662 71390 0.92 72052 78 592 67229 0.87 67821 79 564 66694 0.84 67258 80 540 65358 0.82 65898 81 528 63229 0.83 63757 82 573 62085 0.91 62658 83 603 62948 0.95 63551 84 498 60820 0.81 61318 85 558 66878 0.83 67436 86 511 60577 0.84 61088 87 499 60363 0.82 60862 88 497 57582 0.86 58079 89 569 59964 0.94 60533 90 542 59189 0.91 59731 91 511 60869 0.83 61380 92 532 57896 0.91 58428 93 524 56055 0.93 56579 94 456 55122 0.82 55578 95 536 56979 0.93 57515 96 517 53843 0.95 54360 97 502 53239 0.93 53741 98 435 52155 0.83 52590 99 323 0 100.00 323 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 40304 195294 17.11 235598 2 32504 160696 16.82 193200 3 32827 161810 16.87 194637 4 31213 155469 16.72 186682 5 5913 310797 1.87 316710 6 5806 424738 1.35 430544 7 6455 583795 1.09 590250 8 6850 573672 1.18 580522 9 7125 542758 1.30 549883 10 6667 555864 1.19 562531 11 6681 544197 1.21 550878 12 6783 509460 1.31 516243 13 6358 523982 1.20 530340 14 6316 525993 1.19 532309 15 6645 536181 1.22 542826 16 5881 513960 1.13 519841 17 6092 510825 1.18 516917 18 6364 509585 1.23 515949 19 5743 475711 1.19 481454 20 6049 499545 1.20 505594 21 5993 475088 1.25 481081 22 5847 457832 1.26 463679 23 5595 450234 1.23 455829 24 5526 433990 1.26 439516 25 5712 430801 1.31 436513 26 5469 428505 1.26 433974 27 5957 457456 1.29 463413 28 5184 433919 1.18 439103 29 5549 423087 1.29 428636 30 5485 413437 1.31 418922 31 5121 408895 1.24 414016 32 4905 397072 1.22 401977 33 5216 391268 1.32 396484 34 5011 387667 1.28 392678 35 5496 399539 1.36 405035 36 5014 392710 1.26 397724 37 4876 390809 1.23 395685 38 5171 407021 1.25 412192 39 4934 375140 1.30 380074 40 4822 391745 1.22 396567 41 4744 370541 1.26 375285 42 4864 378448 1.27 383312 43 4686 360674 1.28 365360 44 4468 356958 1.24 361426 45 4687 357504 1.29 362191 46 4335 362761 1.18 367096 47 4341 351486 1.22 355827 48 4482 343672 1.29 348154 49 4329 351467 1.22 355796 50 4327 345494 1.24 349821 51 4342 337716 1.27 342058 52 3970 322634 1.22 326604 53 3994 321795 1.23 325789 54 3811 312097 1.21 315908 55 3932 321287 1.21 325219 56 3885 311496 1.23 315381 57 3925 321534 1.21 325459 58 3740 309230 1.20 312970 59 3808 297506 1.26 301314 60 3996 305865 1.29 309861 61 3609 292686 1.22 296295 62 3584 290500 1.22 294084 63 3697 291162 1.25 294859 64 3478 280976 1.22 284454 65 3423 284346 1.19 287769 66 3406 274478 1.23 277884 67 3219 274813 1.16 278032 68 3506 282385 1.23 285891 69 3516 273952 1.27 277468 70 3195 264178 1.19 267373 71 3193 261450 1.21 264643 72 3249 260008 1.23 263257 73 3080 257221 1.18 260301 74 3126 258141 1.20 261267 75 3079 255279 1.19 258358 76 2903 245594 1.17 248497 77 3064 243982 1.24 247046 78 3151 245783 1.27 248934 79 3011 247782 1.20 250793 80 2986 239458 1.23 242444 81 2995 239333 1.24 242328 82 2926 234909 1.23 237835 83 2846 233020 1.21 235866 84 2985 231320 1.27 234305 85 2813 228009 1.22 230822 86 2688 227467 1.17 230155 87 2887 224041 1.27 226928 88 2647 217208 1.20 219855 89 2660 216348 1.21 219008 90 2725 214676 1.25 217401 91 2633 213198 1.22 215831 92 2498 210333 1.17 212831 93 2481 208217 1.18 210698 94 2404 205052 1.16 207456 95 2426 201842 1.19 204268 96 2471 198785 1.23 201256 97 2193 198741 1.09 200934 98 1878 189702 0.98 191580 99 1432 0 100.00 1432