File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated chgs	Unmethylated chgs	Methylated CHHs	Unmethylated CHHs
12M_R1_val_1_bismark_bt2_pe.bam	192759606	112355889	51523832	28879779	106	11212007	101143882	2725400659	47153262	302909324	1834477	481680820	7382974	1884439802
13M_R1_val_1_bismark_bt2_pe.bam	217295607	124898086	57467614	34929775	132	12058069	112840017	2895601370	49622161	336438857	2041725	523821535	8365379	1975311713
16F_R1_val_1_bismark_bt2_pe.bam	184170994	103095802	53479707	27595143	342	8916078	94179724	2377770409	37346078	268205283	1784502	418913612	7425685	1644095249
19F_R1_val_1_bismark_bt2_pe.bam	199653889	111540062	57418948	30693499	1380	11968295	99571767	2486290912	38715437	284892928	1881993	443141610	8347696	1709311248
22F_R1_val_1_bismark_bt2_pe.bam	125853047	72294725	36996632	16560927	763	5547873	66746852	1932255721	28515624	210931753	1366744	334520859	5635575	1351285166
23M_R1_val_1_bismark_bt2_pe.bam	211649411	123206639	54462265	33980356	151	12556916	110649723	2894655837	51270609	325736336	2002961	516029177	8414346	1991202408
29F_R1_val_1_bismark_bt2_pe.bam	137641794	78897505	39744516	18999379	394	5987464	72910041	2061199527	29672752	228068733	1416706	355765857	5937298	1440338181
31M_R1_val_1_bismark_bt2_pe.bam	141797876	83818878	35155949	22822987	62	6627492	77191386	1930776015	34183478	220646744	1349709	346999276	5922078	1321674730
35F_R1_val_1_bismark_bt2_pe.bam	159213229	91805586	45218941	22187142	1560	7952488	83853098	2298440911	34690212	254538680	1663625	397912346	6720771	1602915277
36F_R1_val_1_bismark_bt2_pe.bam	163408505	93892593	45977126	23537716	1070	8685580	85207013	2328124966	34436105	260760867	1741368	405189661	7322382	1618674583
39F_R1_val_1_bismark_bt2_pe.bam	156641108	88889587	44785775	22964248	1498	8817393	80072194	2074276116	31536948	233554310	1496914	362416138	6317241	1438954565
3F_R1_val_1_bismark_bt2_pe.bam	175332621	94817525	56280666	24233651	779	8216159	86601366	2245598302	33278296	258732657	1581182	397571420	6889997	1547544750
41F_R1_val_1_bismark_bt2_pe.bam	112955420	61811578	34596122	16547436	284	5761178	56050400	1402364113	21603092	158790370	1050441	248626025	4458912	967835273
44F_R1_val_1_bismark_bt2_pe.bam	308919236	175960567	88375390	44582346	933	18804196	157156371	4359634563	62164671	486787004	2974806	754995811	12301418	3040410853
48M_R1_val_1_bismark_bt2_pe.bam	202125624	115530697	50836754	35758041	132	11986797	103543900	2570349030	46430852	302893637	1955189	487842570	9333350	1721893432
50F_R1_val_1_bismark_bt2_pe.bam	147179212	83380816	45245169	18552725	502	6655476	76725340	2234334784	33203460	244518398	1600748	386893249	6728111	1561390818
52F_R1_val_1_bismark_bt2_pe.bam	174210505	98980807	52259129	22970199	370	8959393	90021414	2568366686	37267533	280880651	1750935	440074373	7241846	1801151348
53F_R1_val_1_bismark_bt2_pe.bam	171116745	99734726	47365652	24015070	1297	9245919	90488807	2495589632	36895767	273790381	1730940	429246884	7042696	1746882964
54F_R1_val_1_bismark_bt2_pe.bam	198527033	105570905	68325477	24629933	718	11115208	94455697	2648996482	39062781	291237285	1817935	459726104	7450923	1849701454
59M_R1_val_1_bismark_bt2_pe.bam	140047179	80039680	34620424	25386965	110	6805695	73233985	1689141290	31866013	194609831	1219594	309497248	5167236	1146781368
64M_R1_val_1_bismark_bt2_pe.bam	168612201	100387466	42325464	25899088	183	8490663	91896803	2479740246	42206303	276397190	1779052	438750654	7273814	1713333233
6M_R1_val_1_bismark_bt2_pe.bam	156817982	87758931	43018405	26040537	109	7539487	80219444	1995315281	36932556	241004510	1621071	379429880	7648031	1328679233
76F_R1_val_1_bismark_bt2_pe.bam	155271055	91160299	41173079	22936447	1230	8599677	82560622	2243661587	34487480	252523035	1538367	397100054	6745430	1551267221
77F_R1_val_1_bismark_bt2_pe.bam	183300828	105708704	49753928	27836768	1428	10245989	95462715	2499600963	36760446	283258341	1702958	441615989	7092183	1729171046
7M_R1_val_1_bismark_bt2_pe.bam	144201637	82406847	40082891	21711764	135	6437944	75968903	2148117321	38122812	236284094	1485354	381726093	6163716	1484335252
9M_R1_val_1_bismark_bt2_pe.bam	135520937	79266038	36121166	20133631	102	5965015	73301023	2060013095	34898355	232890147	1383254	367770942	5644769	1417425628