Alignment Stats
| Sequence pairs analysed in total |
135520937 |
| Paired-end alignments with a unique best hit |
79266140 |
| Pairs without alignments under any condition |
36121166 |
| Pairs that did not map uniquely |
20133631 |
| Genomic sequence context not extractable (edges of chromosomes) |
102 |
|
|
Cytosine Methylation
| Total C's analysed |
3451682585 |
| Methylated C's in CpG context |
60112195 |
| Methylated C's in CHG context |
2380787 |
| Methylated C's in CHH context |
9648034 |
| Methylated C's in Unknown context |
242012 |
| Unmethylated C's in CpG context |
394248006 |
| Unmethylated C's in CHG context |
622580948 |
| Unmethylated C's in CHH context |
2362712615 |
| Unmethylated C's in Unknown context |
10829644 |
| Percentage methylation (CpG context) |
13.2% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
19858802 |
original top strand |
| CTOT |
19790665 |
complementary to original top strand |
| CTOB |
19772967 |
complementary to original bottom strand |
| OB |
19843604 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
79266038 |
| Unique alignments |
73301023 |
| Duplicates removed |
5965015 |
| Duplicated alignments were found at 5468634 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2060013095 |
| Methylated C's in CpG context |
34898355 |
| Methylated C's in CHG context |
1383254 |
| Methylated C's in CHH context |
5644769 |
| Unmethylated C's in CpG context |
232890147 |
| Unmethylated C's in CHG context |
367770942 |
| Unmethylated C's in CHH context |
1417425628 |
| Percentage methylation (CpG context) |
13.0% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
