7M_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 75968903 lines in total Total number of methylation call strings processed: 151937806 Final Cytosine Methylation Report ================================= Total number of C's analysed: 2148117321 Total methylated C's in CpG context: 38122812 Total methylated C's in CHG context: 1485354 Total methylated C's in CHH context: 6163716 Total C to T conversions in CpG context: 236284094 Total C to T conversions in CHG context: 381726093 Total C to T conversions in CHH context: 1484335252 C methylated in CpG context: 13.9% C methylated in non-CpG context: 0.4%