Alignment Stats
| Sequence pairs analysed in total |
144201637 |
| Paired-end alignments with a unique best hit |
82406982 |
| Pairs without alignments under any condition |
40082891 |
| Pairs that did not map uniquely |
21711764 |
| Genomic sequence context not extractable (edges of chromosomes) |
135 |
|
|
Cytosine Methylation
| Total C's analysed |
3542260680 |
| Methylated C's in CpG context |
64643513 |
| Methylated C's in CHG context |
2523236 |
| Methylated C's in CHH context |
10492323 |
| Methylated C's in Unknown context |
265080 |
| Unmethylated C's in CpG context |
394013234 |
| Unmethylated C's in CHG context |
636748264 |
| Unmethylated C's in CHH context |
2433840110 |
| Unmethylated C's in Unknown context |
11401161 |
| Percentage methylation (CpG context) |
14.1% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
20684348 |
original top strand |
| CTOT |
20510003 |
complementary to original top strand |
| CTOB |
20518944 |
complementary to original bottom strand |
| OB |
20693552 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
82406847 |
| Unique alignments |
75968903 |
| Duplicates removed |
6437944 |
| Duplicated alignments were found at 5875780 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2148117321 |
| Methylated C's in CpG context |
38122812 |
| Methylated C's in CHG context |
1485354 |
| Methylated C's in CHH context |
6163716 |
| Unmethylated C's in CpG context |
236284094 |
| Unmethylated C's in CHG context |
381726093 |
| Unmethylated C's in CHH context |
1484335252 |
| Percentage methylation (CpG context) |
13.9% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
