Alignment Stats
| Sequence pairs analysed in total |
183300828 |
| Paired-end alignments with a unique best hit |
105710132 |
| Pairs without alignments under any condition |
49753928 |
| Pairs that did not map uniquely |
27836768 |
| Genomic sequence context not extractable (edges of chromosomes) |
1428 |
|
|
Cytosine Methylation
| Total C's analysed |
4419317856 |
| Methylated C's in CpG context |
66262743 |
| Methylated C's in CHG context |
3100353 |
| Methylated C's in CHH context |
12655064 |
| Methylated C's in Unknown context |
288225 |
| Unmethylated C's in CpG context |
507907192 |
| Unmethylated C's in CHG context |
789148399 |
| Unmethylated C's in CHH context |
3040244105 |
| Unmethylated C's in Unknown context |
13811814 |
| Percentage methylation (CpG context) |
11.5% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
26698380 |
original top strand |
| CTOT |
26560878 |
complementary to original top strand |
| CTOB |
26145268 |
complementary to original bottom strand |
| OB |
26304178 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
105708704 |
| Unique alignments |
95462715 |
| Duplicates removed |
10245989 |
| Duplicated alignments were found at 8558972 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2499600963 |
| Methylated C's in CpG context |
36760446 |
| Methylated C's in CHG context |
1702958 |
| Methylated C's in CHH context |
7092183 |
| Unmethylated C's in CpG context |
283258341 |
| Unmethylated C's in CHG context |
441615989 |
| Unmethylated C's in CHH context |
1729171046 |
| Percentage methylation (CpG context) |
11.5% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
