76F_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 82560622 lines in total Total number of methylation call strings processed: 165121244 Final Cytosine Methylation Report ================================= Total number of C's analysed: 2243661587 Total methylated C's in CpG context: 34487480 Total methylated C's in CHG context: 1538367 Total methylated C's in CHH context: 6745430 Total C to T conversions in CpG context: 252523035 Total C to T conversions in CHG context: 397100054 Total C to T conversions in CHH context: 1551267221 C methylated in CpG context: 12.0% C methylated in non-CpG context: 0.4%