Alignment Stats
| Sequence pairs analysed in total |
155271055 |
| Paired-end alignments with a unique best hit |
91161529 |
| Pairs without alignments under any condition |
41173079 |
| Pairs that did not map uniquely |
22936447 |
| Genomic sequence context not extractable (edges of chromosomes) |
1230 |
|
|
Cytosine Methylation
| Total C's analysed |
3862098313 |
| Methylated C's in CpG context |
60581431 |
| Methylated C's in CHG context |
2720254 |
| Methylated C's in CHH context |
12090716 |
| Methylated C's in Unknown context |
271187 |
| Unmethylated C's in CpG context |
441252446 |
| Unmethylated C's in CHG context |
691448235 |
| Unmethylated C's in CHH context |
2654005231 |
| Unmethylated C's in Unknown context |
12231242 |
| Percentage methylation (CpG context) |
12.1% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
23055743 |
original top strand |
| CTOT |
22910539 |
complementary to original top strand |
| CTOB |
22526464 |
complementary to original bottom strand |
| OB |
22667553 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
91160299 |
| Unique alignments |
82560622 |
| Duplicates removed |
8599677 |
| Duplicated alignments were found at 7152453 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2243661587 |
| Methylated C's in CpG context |
34487480 |
| Methylated C's in CHG context |
1538367 |
| Methylated C's in CHH context |
6745430 |
| Unmethylated C's in CpG context |
252523035 |
| Unmethylated C's in CHG context |
397100054 |
| Unmethylated C's in CHH context |
1551267221 |
| Percentage methylation (CpG context) |
12.0% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
