Alignment Stats
| Sequence pairs analysed in total |
156817982 |
| Paired-end alignments with a unique best hit |
87759040 |
| Pairs without alignments under any condition |
43018405 |
| Pairs that did not map uniquely |
26040537 |
| Genomic sequence context not extractable (edges of chromosomes) |
109 |
|
|
Cytosine Methylation
| Total C's analysed |
3628530531 |
| Methylated C's in CpG context |
69347460 |
| Methylated C's in CHG context |
3029600 |
| Methylated C's in CHH context |
14405917 |
| Methylated C's in Unknown context |
368349 |
| Unmethylated C's in CpG context |
443733583 |
| Unmethylated C's in CHG context |
698908031 |
| Unmethylated C's in CHH context |
2399105940 |
| Unmethylated C's in Unknown context |
11131292 |
| Percentage methylation (CpG context) |
13.5% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.6% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
21781502 |
original top strand |
| CTOT |
22074312 |
complementary to original top strand |
| CTOB |
22094808 |
complementary to original bottom strand |
| OB |
21808309 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
87758931 |
| Unique alignments |
80219444 |
| Duplicates removed |
7539487 |
| Duplicated alignments were found at 6731573 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1995315281 |
| Methylated C's in CpG context |
36932556 |
| Methylated C's in CHG context |
1621071 |
| Methylated C's in CHH context |
7648031 |
| Unmethylated C's in CpG context |
241004510 |
| Unmethylated C's in CHG context |
379429880 |
| Unmethylated C's in CHH context |
1328679233 |
| Percentage methylation (CpG context) |
13.3% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
