Alignment Stats
| Sequence pairs analysed in total |
168612201 |
| Paired-end alignments with a unique best hit |
100387649 |
| Pairs without alignments under any condition |
42325464 |
| Pairs that did not map uniquely |
25899088 |
| Genomic sequence context not extractable (edges of chromosomes) |
183 |
|
|
Cytosine Methylation
| Total C's analysed |
4255006376 |
| Methylated C's in CpG context |
74469637 |
| Methylated C's in CHG context |
3141876 |
| Methylated C's in CHH context |
12821712 |
| Methylated C's in Unknown context |
300871 |
| Unmethylated C's in CpG context |
479743410 |
| Unmethylated C's in CHG context |
760913719 |
| Unmethylated C's in CHH context |
2923916022 |
| Unmethylated C's in Unknown context |
13388464 |
| Percentage methylation (CpG context) |
13.4% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
25135096 |
original top strand |
| CTOT |
25029751 |
complementary to original top strand |
| CTOB |
25053867 |
complementary to original bottom strand |
| OB |
25168752 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
100387466 |
| Unique alignments |
91896803 |
| Duplicates removed |
8490663 |
| Duplicated alignments were found at 7687406 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2479740246 |
| Methylated C's in CpG context |
42206303 |
| Methylated C's in CHG context |
1779052 |
| Methylated C's in CHH context |
7273814 |
| Unmethylated C's in CpG context |
276397190 |
| Unmethylated C's in CHG context |
438750654 |
| Unmethylated C's in CHH context |
1713333233 |
| Percentage methylation (CpG context) |
13.2% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
