Alignment Stats
| Sequence pairs analysed in total |
140047179 |
| Paired-end alignments with a unique best hit |
80039790 |
| Pairs without alignments under any condition |
34620424 |
| Pairs that did not map uniquely |
25386965 |
| Genomic sequence context not extractable (edges of chromosomes) |
110 |
|
|
Cytosine Methylation
| Total C's analysed |
3113845939 |
| Methylated C's in CpG context |
60813384 |
| Methylated C's in CHG context |
2325913 |
| Methylated C's in CHH context |
9784189 |
| Methylated C's in Unknown context |
247025 |
| Unmethylated C's in CpG context |
363464595 |
| Unmethylated C's in CHG context |
577415501 |
| Unmethylated C's in CHH context |
2100042357 |
| Unmethylated C's in Unknown context |
9330745 |
| Percentage methylation (CpG context) |
14.3% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
20029357 |
original top strand |
| CTOT |
19976209 |
complementary to original top strand |
| CTOB |
19987409 |
complementary to original bottom strand |
| OB |
20046705 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
80039680 |
| Unique alignments |
73233985 |
| Duplicates removed |
6805695 |
| Duplicated alignments were found at 6156538 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1689141290 |
| Methylated C's in CpG context |
31866013 |
| Methylated C's in CHG context |
1219594 |
| Methylated C's in CHH context |
5167236 |
| Unmethylated C's in CpG context |
194609831 |
| Unmethylated C's in CHG context |
309497248 |
| Unmethylated C's in CHH context |
1146781368 |
| Percentage methylation (CpG context) |
14.1% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
