Alignment Stats
| Sequence pairs analysed in total |
198527033 |
| Paired-end alignments with a unique best hit |
105571623 |
| Pairs without alignments under any condition |
68325477 |
| Pairs that did not map uniquely |
24629933 |
| Genomic sequence context not extractable (edges of chromosomes) |
718 |
|
|
Cytosine Methylation
| Total C's analysed |
4489602415 |
| Methylated C's in CpG context |
67942623 |
| Methylated C's in CHG context |
3168438 |
| Methylated C's in CHH context |
12958698 |
| Methylated C's in Unknown context |
291793 |
| Unmethylated C's in CpG context |
499425422 |
| Unmethylated C's in CHG context |
787316597 |
| Unmethylated C's in CHH context |
3118790637 |
| Unmethylated C's in Unknown context |
14530699 |
| Percentage methylation (CpG context) |
12.0% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
26510441 |
original top strand |
| CTOT |
26382330 |
complementary to original top strand |
| CTOB |
26269629 |
complementary to original bottom strand |
| OB |
26408505 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
105570905 |
| Unique alignments |
94455697 |
| Duplicates removed |
11115208 |
| Duplicated alignments were found at 9824762 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2648996482 |
| Methylated C's in CpG context |
39062781 |
| Methylated C's in CHG context |
1817935 |
| Methylated C's in CHH context |
7450923 |
| Unmethylated C's in CpG context |
291237285 |
| Unmethylated C's in CHG context |
459726104 |
| Unmethylated C's in CHH context |
1849701454 |
| Percentage methylation (CpG context) |
11.8% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
