Alignment Stats
| Sequence pairs analysed in total |
171116745 |
| Paired-end alignments with a unique best hit |
99736023 |
| Pairs without alignments under any condition |
47365652 |
| Pairs that did not map uniquely |
24015070 |
| Genomic sequence context not extractable (edges of chromosomes) |
1297 |
|
|
Cytosine Methylation
| Total C's analysed |
4213397728 |
| Methylated C's in CpG context |
63588936 |
| Methylated C's in CHG context |
2999855 |
| Methylated C's in CHH context |
12088410 |
| Methylated C's in Unknown context |
265748 |
| Unmethylated C's in CpG context |
468154619 |
| Unmethylated C's in CHG context |
732034413 |
| Unmethylated C's in CHH context |
2934531495 |
| Unmethylated C's in Unknown context |
13679528 |
| Percentage methylation (CpG context) |
12.0% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
25110290 |
original top strand |
| CTOT |
24871801 |
complementary to original top strand |
| CTOB |
24748499 |
complementary to original bottom strand |
| OB |
25004136 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
99734726 |
| Unique alignments |
90488807 |
| Duplicates removed |
9245919 |
| Duplicated alignments were found at 7993096 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2495589632 |
| Methylated C's in CpG context |
36895767 |
| Methylated C's in CHG context |
1730940 |
| Methylated C's in CHH context |
7042696 |
| Unmethylated C's in CpG context |
273790381 |
| Unmethylated C's in CHG context |
429246884 |
| Unmethylated C's in CHH context |
1746882964 |
| Percentage methylation (CpG context) |
11.9% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
