Alignment Stats
| Sequence pairs analysed in total |
174210505 |
| Paired-end alignments with a unique best hit |
98981177 |
| Pairs without alignments under any condition |
52259129 |
| Pairs that did not map uniquely |
22970199 |
| Genomic sequence context not extractable (edges of chromosomes) |
370 |
|
|
Cytosine Methylation
| Total C's analysed |
4207778543 |
| Methylated C's in CpG context |
62667593 |
| Methylated C's in CHG context |
2949453 |
| Methylated C's in CHH context |
12131312 |
| Methylated C's in Unknown context |
266061 |
| Unmethylated C's in CpG context |
465500611 |
| Unmethylated C's in CHG context |
728104532 |
| Unmethylated C's in CHH context |
2936425042 |
| Unmethylated C's in Unknown context |
13731359 |
| Percentage methylation (CpG context) |
11.9% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
25019409 |
original top strand |
| CTOT |
24511357 |
complementary to original top strand |
| CTOB |
24471994 |
complementary to original bottom strand |
| OB |
24978047 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
98980807 |
| Unique alignments |
90021414 |
| Duplicates removed |
8959393 |
| Duplicated alignments were found at 8100580 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2568366686 |
| Methylated C's in CpG context |
37267533 |
| Methylated C's in CHG context |
1750935 |
| Methylated C's in CHH context |
7241846 |
| Unmethylated C's in CpG context |
280880651 |
| Unmethylated C's in CHG context |
440074373 |
| Unmethylated C's in CHH context |
1801151348 |
| Percentage methylation (CpG context) |
11.7% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
