50F_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 76725340 lines in total Total number of methylation call strings processed: 153450680 Final Cytosine Methylation Report ================================= Total number of C's analysed: 2234334784 Total methylated C's in CpG context: 33203460 Total methylated C's in CHG context: 1600748 Total methylated C's in CHH context: 6728111 Total C to T conversions in CpG context: 244518398 Total C to T conversions in CHG context: 386893249 Total C to T conversions in CHH context: 1561390818 C methylated in CpG context: 12.0% C methylated in non-CpG context: 0.4%