Alignment Stats
| Sequence pairs analysed in total |
147179212 |
| Paired-end alignments with a unique best hit |
83381318 |
| Pairs without alignments under any condition |
45245169 |
| Pairs that did not map uniquely |
18552725 |
| Genomic sequence context not extractable (edges of chromosomes) |
502 |
|
|
Cytosine Methylation
| Total C's analysed |
3568167604 |
| Methylated C's in CpG context |
54317296 |
| Methylated C's in CHG context |
2629468 |
| Methylated C's in CHH context |
11006199 |
| Methylated C's in Unknown context |
248689 |
| Unmethylated C's in CpG context |
395052270 |
| Unmethylated C's in CHG context |
624289769 |
| Unmethylated C's in CHH context |
2480872602 |
| Unmethylated C's in Unknown context |
11791014 |
| Percentage methylation (CpG context) |
12.1% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
20941531 |
original top strand |
| CTOT |
20857716 |
complementary to original top strand |
| CTOB |
20742134 |
complementary to original bottom strand |
| OB |
20839435 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
83380816 |
| Unique alignments |
76725340 |
| Duplicates removed |
6655476 |
| Duplicated alignments were found at 5997100 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2234334784 |
| Methylated C's in CpG context |
33203460 |
| Methylated C's in CHG context |
1600748 |
| Methylated C's in CHH context |
6728111 |
| Unmethylated C's in CpG context |
244518398 |
| Unmethylated C's in CHG context |
386893249 |
| Unmethylated C's in CHH context |
1561390818 |
| Percentage methylation (CpG context) |
12.0% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
