48M_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 103543900 lines in total Total number of methylation call strings processed: 207087800 Final Cytosine Methylation Report ================================= Total number of C's analysed: 2570349030 Total methylated C's in CpG context: 46430852 Total methylated C's in CHG context: 1955189 Total methylated C's in CHH context: 9333350 Total C to T conversions in CpG context: 302893637 Total C to T conversions in CHG context: 487842570 Total C to T conversions in CHH context: 1721893432 C methylated in CpG context: 13.3% C methylated in non-CpG context: 0.5%