Alignment Stats
| Sequence pairs analysed in total |
202125624 |
| Paired-end alignments with a unique best hit |
115530829 |
| Pairs without alignments under any condition |
50836754 |
| Pairs that did not map uniquely |
35758041 |
| Genomic sequence context not extractable (edges of chromosomes) |
132 |
|
|
Cytosine Methylation
| Total C's analysed |
4790942878 |
| Methylated C's in CpG context |
89079471 |
| Methylated C's in CHG context |
3760708 |
| Methylated C's in CHH context |
18396502 |
| Methylated C's in Unknown context |
414558 |
| Unmethylated C's in CpG context |
571435071 |
| Unmethylated C's in CHG context |
921433272 |
| Unmethylated C's in CHH context |
3186837854 |
| Unmethylated C's in Unknown context |
14527659 |
| Percentage methylation (CpG context) |
13.5% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.6% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
28924082 |
original top strand |
| CTOT |
28849225 |
complementary to original top strand |
| CTOB |
28842857 |
complementary to original bottom strand |
| OB |
28914533 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
115530697 |
| Unique alignments |
103543900 |
| Duplicates removed |
11986797 |
| Duplicated alignments were found at 10417713 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2570349030 |
| Methylated C's in CpG context |
46430852 |
| Methylated C's in CHG context |
1955189 |
| Methylated C's in CHH context |
9333350 |
| Unmethylated C's in CpG context |
302893637 |
| Unmethylated C's in CHG context |
487842570 |
| Unmethylated C's in CHH context |
1721893432 |
| Percentage methylation (CpG context) |
13.3% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
|
|
