44F_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 157156371 lines in total Total number of methylation call strings processed: 314312742 Final Cytosine Methylation Report ================================= Total number of C's analysed: 4359634563 Total methylated C's in CpG context: 62164671 Total methylated C's in CHG context: 2974806 Total methylated C's in CHH context: 12301418 Total C to T conversions in CpG context: 486787004 Total C to T conversions in CHG context: 754995811 Total C to T conversions in CHH context: 3040410853 C methylated in CpG context: 11.3% C methylated in non-CpG context: 0.4%