Alignment Stats
| Sequence pairs analysed in total |
308919236 |
| Paired-end alignments with a unique best hit |
175961500 |
| Pairs without alignments under any condition |
88375390 |
| Pairs that did not map uniquely |
44582346 |
| Genomic sequence context not extractable (edges of chromosomes) |
933 |
|
|
Cytosine Methylation
| Total C's analysed |
7480514122 |
| Methylated C's in CpG context |
109273103 |
| Methylated C's in CHG context |
5254054 |
| Methylated C's in CHH context |
21855128 |
| Methylated C's in Unknown context |
475606 |
| Unmethylated C's in CpG context |
845598808 |
| Unmethylated C's in CHG context |
1308578802 |
| Unmethylated C's in CHH context |
5189954227 |
| Unmethylated C's in Unknown context |
24907669 |
| Percentage methylation (CpG context) |
11.4% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
44288358 |
original top strand |
| CTOT |
43850154 |
complementary to original top strand |
| CTOB |
43681468 |
complementary to original bottom strand |
| OB |
44140587 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
175960567 |
| Unique alignments |
157156371 |
| Duplicates removed |
18804196 |
| Duplicated alignments were found at 16371933 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
4359634563 |
| Methylated C's in CpG context |
62164671 |
| Methylated C's in CHG context |
2974806 |
| Methylated C's in CHH context |
12301418 |
| Unmethylated C's in CpG context |
486787004 |
| Unmethylated C's in CHG context |
754995811 |
| Unmethylated C's in CHH context |
3040410853 |
| Percentage methylation (CpG context) |
11.3% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
