Alignment Stats
| Sequence pairs analysed in total |
112955420 |
| Paired-end alignments with a unique best hit |
61811862 |
| Pairs without alignments under any condition |
34596122 |
| Pairs that did not map uniquely |
16547436 |
| Genomic sequence context not extractable (edges of chromosomes) |
284 |
|
|
Cytosine Methylation
| Total C's analysed |
2464455832 |
| Methylated C's in CpG context |
39356024 |
| Methylated C's in CHG context |
1900918 |
| Methylated C's in CHH context |
7921201 |
| Methylated C's in Unknown context |
211526 |
| Unmethylated C's in CpG context |
283206268 |
| Unmethylated C's in CHG context |
442852463 |
| Unmethylated C's in CHH context |
1689218958 |
| Unmethylated C's in Unknown context |
8248351 |
| Percentage methylation (CpG context) |
12.2% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
15576842 |
original top strand |
| CTOT |
15371318 |
complementary to original top strand |
| CTOB |
15324481 |
complementary to original bottom strand |
| OB |
15538937 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
61811578 |
| Unique alignments |
56050400 |
| Duplicates removed |
5761178 |
| Duplicated alignments were found at 5252656 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1402364113 |
| Methylated C's in CpG context |
21603092 |
| Methylated C's in CHG context |
1050441 |
| Methylated C's in CHH context |
4458912 |
| Unmethylated C's in CpG context |
158790370 |
| Unmethylated C's in CHG context |
248626025 |
| Unmethylated C's in CHH context |
967835273 |
| Percentage methylation (CpG context) |
12.0% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
