Alignment Stats
| Sequence pairs analysed in total |
175332621 |
| Paired-end alignments with a unique best hit |
94818304 |
| Pairs without alignments under any condition |
56280666 |
| Pairs that did not map uniquely |
24233651 |
| Genomic sequence context not extractable (edges of chromosomes) |
779 |
|
|
Cytosine Methylation
| Total C's analysed |
3881124484 |
| Methylated C's in CpG context |
59562205 |
| Methylated C's in CHG context |
2845441 |
| Methylated C's in CHH context |
12466440 |
| Methylated C's in Unknown context |
289535 |
| Unmethylated C's in CpG context |
453919526 |
| Unmethylated C's in CHG context |
696033895 |
| Unmethylated C's in CHH context |
2656296977 |
| Unmethylated C's in Unknown context |
11856812 |
| Percentage methylation (CpG context) |
11.6% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
23859022 |
original top strand |
| CTOT |
23742044 |
complementary to original top strand |
| CTOB |
23539465 |
complementary to original bottom strand |
| OB |
23676994 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
94817525 |
| Unique alignments |
86601366 |
| Duplicates removed |
8216159 |
| Duplicated alignments were found at 7125025 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2245598302 |
| Methylated C's in CpG context |
33278296 |
| Methylated C's in CHG context |
1581182 |
| Methylated C's in CHH context |
6889997 |
| Unmethylated C's in CpG context |
258732657 |
| Unmethylated C's in CHG context |
397571420 |
| Unmethylated C's in CHH context |
1547544750 |
| Percentage methylation (CpG context) |
11.4% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
