FastQCFastQC Report
Thu 15 Jul 2021
39F_R1_val_1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename39F_R1_val_1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences156641108
Sequences flagged as poor quality0
Sequence length20-136
%GC20

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGCCCACGAGACTATTGCGCTCATCTCGTATGCCGTCTTCTGCTTGAAA11332780.7234869661417359TruSeq Adapter, Index 7 (96% over 28bp)
GAGCCCACGAGACTATTGCGCTCATCGCGTATGCCGTCTTCTGCTTGAAA5454300.34820361459649535Illumina PCR Primer Index 7 (96% over 26bp)
CCCACGAGACTATTGCGCTCATCTCGTATGCCGTCTTCTGCTTGAAAAGG1996900.12748249967690475TruSeq Adapter, Index 7 (96% over 28bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)