Alignment Stats
| Sequence pairs analysed in total |
156641108 |
| Paired-end alignments with a unique best hit |
88891085 |
| Pairs without alignments under any condition |
44785775 |
| Pairs that did not map uniquely |
22964248 |
| Genomic sequence context not extractable (edges of chromosomes) |
1498 |
|
|
Cytosine Methylation
| Total C's analysed |
3682137464 |
| Methylated C's in CpG context |
57008069 |
| Methylated C's in CHG context |
2722172 |
| Methylated C's in CHH context |
11308743 |
| Methylated C's in Unknown context |
285118 |
| Unmethylated C's in CpG context |
420738828 |
| Unmethylated C's in CHG context |
650131464 |
| Unmethylated C's in CHH context |
2540228188 |
| Unmethylated C's in Unknown context |
11828259 |
| Percentage methylation (CpG context) |
11.9% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
22395048 |
original top strand |
| CTOT |
22304123 |
complementary to original top strand |
| CTOB |
22052360 |
complementary to original bottom strand |
| OB |
22138056 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
88889587 |
| Unique alignments |
80072194 |
| Duplicates removed |
8817393 |
| Duplicated alignments were found at 7355701 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2074276116 |
| Methylated C's in CpG context |
31536948 |
| Methylated C's in CHG context |
1496914 |
| Methylated C's in CHH context |
6317241 |
| Unmethylated C's in CpG context |
233554310 |
| Unmethylated C's in CHG context |
362416138 |
| Unmethylated C's in CHH context |
1438954565 |
| Percentage methylation (CpG context) |
11.9% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
