Alignment Stats
| Sequence pairs analysed in total |
163408505 |
| Paired-end alignments with a unique best hit |
93893663 |
| Pairs without alignments under any condition |
45977126 |
| Pairs that did not map uniquely |
23537716 |
| Genomic sequence context not extractable (edges of chromosomes) |
1070 |
|
|
Cytosine Methylation
| Total C's analysed |
3956409395 |
| Methylated C's in CpG context |
59938704 |
| Methylated C's in CHG context |
3056288 |
| Methylated C's in CHH context |
12809039 |
| Methylated C's in Unknown context |
275272 |
| Unmethylated C's in CpG context |
448891959 |
| Unmethylated C's in CHG context |
696190459 |
| Unmethylated C's in CHH context |
2735522946 |
| Unmethylated C's in Unknown context |
12801196 |
| Percentage methylation (CpG context) |
11.8% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
23677898 |
original top strand |
| CTOT |
23472350 |
complementary to original top strand |
| CTOB |
23271930 |
complementary to original bottom strand |
| OB |
23470415 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
93892593 |
| Unique alignments |
85207013 |
| Duplicates removed |
8685580 |
| Duplicated alignments were found at 7444146 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2328124966 |
| Methylated C's in CpG context |
34436105 |
| Methylated C's in CHG context |
1741368 |
| Methylated C's in CHH context |
7322382 |
| Unmethylated C's in CpG context |
260760867 |
| Unmethylated C's in CHG context |
405189661 |
| Unmethylated C's in CHH context |
1618674583 |
| Percentage methylation (CpG context) |
11.7% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
