35F_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 83853098 lines in total Total number of methylation call strings processed: 167706196 Final Cytosine Methylation Report ================================= Total number of C's analysed: 2298440911 Total methylated C's in CpG context: 34690212 Total methylated C's in CHG context: 1663625 Total methylated C's in CHH context: 6720771 Total C to T conversions in CpG context: 254538680 Total C to T conversions in CHG context: 397912346 Total C to T conversions in CHH context: 1602915277 C methylated in CpG context: 12.0% C methylated in non-CpG context: 0.4%