Alignment Stats
| Sequence pairs analysed in total |
159213229 |
| Paired-end alignments with a unique best hit |
91807146 |
| Pairs without alignments under any condition |
45218941 |
| Pairs that did not map uniquely |
22187142 |
| Genomic sequence context not extractable (edges of chromosomes) |
1560 |
|
|
Cytosine Methylation
| Total C's analysed |
3827582704 |
| Methylated C's in CpG context |
59205639 |
| Methylated C's in CHG context |
2858946 |
| Methylated C's in CHH context |
11415266 |
| Methylated C's in Unknown context |
249940 |
| Unmethylated C's in CpG context |
430606533 |
| Unmethylated C's in CHG context |
670791467 |
| Unmethylated C's in CHH context |
2652704853 |
| Unmethylated C's in Unknown context |
12145715 |
| Percentage methylation (CpG context) |
12.1% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
22935222 |
original top strand |
| CTOT |
23179245 |
complementary to original top strand |
| CTOB |
22958193 |
complementary to original bottom strand |
| OB |
22732926 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
91805586 |
| Unique alignments |
83853098 |
| Duplicates removed |
7952488 |
| Duplicated alignments were found at 6589375 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2298440911 |
| Methylated C's in CpG context |
34690212 |
| Methylated C's in CHG context |
1663625 |
| Methylated C's in CHH context |
6720771 |
| Unmethylated C's in CpG context |
254538680 |
| Unmethylated C's in CHG context |
397912346 |
| Unmethylated C's in CHH context |
1602915277 |
| Percentage methylation (CpG context) |
12.0% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
