31M_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 77191386 lines in total Total number of methylation call strings processed: 154382772 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1930776015 Total methylated C's in CpG context: 34183478 Total methylated C's in CHG context: 1349709 Total methylated C's in CHH context: 5922078 Total C to T conversions in CpG context: 220646744 Total C to T conversions in CHG context: 346999276 Total C to T conversions in CHH context: 1321674730 C methylated in CpG context: 13.4% C methylated in non-CpG context: 0.4%