Alignment Stats
| Sequence pairs analysed in total |
141797876 |
| Paired-end alignments with a unique best hit |
83818940 |
| Pairs without alignments under any condition |
35155949 |
| Pairs that did not map uniquely |
22822987 |
| Genomic sequence context not extractable (edges of chromosomes) |
62 |
|
|
Cytosine Methylation
| Total C's analysed |
3471808061 |
| Methylated C's in CpG context |
63220038 |
| Methylated C's in CHG context |
2486404 |
| Methylated C's in CHH context |
10975824 |
| Methylated C's in Unknown context |
286319 |
| Unmethylated C's in CpG context |
400980153 |
| Unmethylated C's in CHG context |
630300848 |
| Unmethylated C's in CHH context |
2363844794 |
| Unmethylated C's in Unknown context |
10200137 |
| Percentage methylation (CpG context) |
13.6% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
20896957 |
original top strand |
| CTOT |
21003842 |
complementary to original top strand |
| CTOB |
21013523 |
complementary to original bottom strand |
| OB |
20904556 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
83818878 |
| Unique alignments |
77191386 |
| Duplicates removed |
6627492 |
| Duplicated alignments were found at 6055015 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1930776015 |
| Methylated C's in CpG context |
34183478 |
| Methylated C's in CHG context |
1349709 |
| Methylated C's in CHH context |
5922078 |
| Unmethylated C's in CpG context |
220646744 |
| Unmethylated C's in CHG context |
346999276 |
| Unmethylated C's in CHH context |
1321674730 |
| Percentage methylation (CpG context) |
13.4% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
