29F_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 72910041 lines in total Total number of methylation call strings processed: 145820082 Final Cytosine Methylation Report ================================= Total number of C's analysed: 2061199527 Total methylated C's in CpG context: 29672752 Total methylated C's in CHG context: 1416706 Total methylated C's in CHH context: 5937298 Total C to T conversions in CpG context: 228068733 Total C to T conversions in CHG context: 355765857 Total C to T conversions in CHH context: 1440338181 C methylated in CpG context: 11.5% C methylated in non-CpG context: 0.4%