Alignment Stats
| Sequence pairs analysed in total |
137641794 |
| Paired-end alignments with a unique best hit |
78897899 |
| Pairs without alignments under any condition |
39744516 |
| Pairs that did not map uniquely |
18999379 |
| Genomic sequence context not extractable (edges of chromosomes) |
394 |
|
|
Cytosine Methylation
| Total C's analysed |
3335365003 |
| Methylated C's in CpG context |
49477481 |
| Methylated C's in CHG context |
2353635 |
| Methylated C's in CHH context |
9844711 |
| Methylated C's in Unknown context |
215328 |
| Unmethylated C's in CpG context |
373680681 |
| Unmethylated C's in CHG context |
582136274 |
| Unmethylated C's in CHH context |
2317872221 |
| Unmethylated C's in Unknown context |
10880597 |
| Percentage methylation (CpG context) |
11.7% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
19767756 |
original top strand |
| CTOT |
19760348 |
complementary to original top strand |
| CTOB |
19683219 |
complementary to original bottom strand |
| OB |
19686182 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
78897505 |
| Unique alignments |
72910041 |
| Duplicates removed |
5987464 |
| Duplicated alignments were found at 5471094 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2061199527 |
| Methylated C's in CpG context |
29672752 |
| Methylated C's in CHG context |
1416706 |
| Methylated C's in CHH context |
5937298 |
| Unmethylated C's in CpG context |
228068733 |
| Unmethylated C's in CHG context |
355765857 |
| Unmethylated C's in CHH context |
1440338181 |
| Percentage methylation (CpG context) |
11.5% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
