Alignment Stats
Sequence pairs analysed in total |
211649411 |
Paired-end alignments with a unique best hit |
123206790 |
Pairs without alignments under any condition |
54462265 |
Pairs that did not map uniquely |
33980356 |
Genomic sequence context not extractable (edges of chromosomes) |
151 |
|
|
Cytosine Methylation
Total C's analysed |
5169700988 |
Methylated C's in CpG context |
94331085 |
Methylated C's in CHG context |
3683477 |
Methylated C's in CHH context |
15641069 |
Methylated C's in Unknown context |
393549 |
Unmethylated C's in CpG context |
589228239 |
Unmethylated C's in CHG context |
932459147 |
Unmethylated C's in CHH context |
3534357971 |
Unmethylated C's in Unknown context |
16265216 |
Percentage methylation (CpG context) |
13.8% |
Percentage methylation (CHG context) |
0.4% |
Percentage methylation (CHH context) |
0.4% |
Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
OT |
30878916 |
original top strand |
CTOT |
30699033 |
complementary to original top strand |
CTOB |
30723549 |
complementary to original bottom strand |
OB |
30905141 |
original bottom strand |
|
|
Deduplication
Alignments analysed |
123206639 |
Unique alignments |
110649723 |
Duplicates removed |
12556916 |
Duplicated alignments were found at 11142250 different positions |
|
|
Cytosine Methylation after Extraction
Total C's analysed |
2894655837 |
Methylated C's in CpG context |
51270609 |
Methylated C's in CHG context |
2002961 |
Methylated C's in CHH context |
8414346 |
Unmethylated C's in CpG context |
325736336 |
Unmethylated C's in CHG context |
516029177 |
Unmethylated C's in CHH context |
1991202408 |
Percentage methylation (CpG context) |
13.6% |
Percentage methylation (CHG context) |
N/A% |
Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot