22F_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 66746852 lines in total Total number of methylation call strings processed: 133493704 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1932255721 Total methylated C's in CpG context: 28515624 Total methylated C's in CHG context: 1366744 Total methylated C's in CHH context: 5635575 Total C to T conversions in CpG context: 210931753 Total C to T conversions in CHG context: 334520859 Total C to T conversions in CHH context: 1351285166 C methylated in CpG context: 11.9% C methylated in non-CpG context: 0.4%