Alignment Stats
| Sequence pairs analysed in total |
125853047 |
| Paired-end alignments with a unique best hit |
72295488 |
| Pairs without alignments under any condition |
36996632 |
| Pairs that did not map uniquely |
16560927 |
| Genomic sequence context not extractable (edges of chromosomes) |
763 |
|
|
Cytosine Methylation
| Total C's analysed |
3086134405 |
| Methylated C's in CpG context |
46627292 |
| Methylated C's in CHG context |
2254195 |
| Methylated C's in CHH context |
9294865 |
| Methylated C's in Unknown context |
202722 |
| Unmethylated C's in CpG context |
341506695 |
| Unmethylated C's in CHG context |
540076097 |
| Unmethylated C's in CHH context |
2146375261 |
| Unmethylated C's in Unknown context |
10114623 |
| Percentage methylation (CpG context) |
12.0% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
18147434 |
original top strand |
| CTOT |
18110201 |
complementary to original top strand |
| CTOB |
17994896 |
complementary to original bottom strand |
| OB |
18042194 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
72294725 |
| Unique alignments |
66746852 |
| Duplicates removed |
5547873 |
| Duplicated alignments were found at 4871373 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1932255721 |
| Methylated C's in CpG context |
28515624 |
| Methylated C's in CHG context |
1366744 |
| Methylated C's in CHH context |
5635575 |
| Unmethylated C's in CpG context |
210931753 |
| Unmethylated C's in CHG context |
334520859 |
| Unmethylated C's in CHH context |
1351285166 |
| Percentage methylation (CpG context) |
11.9% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
