19F_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 99571767 lines in total Total number of methylation call strings processed: 199143534 Final Cytosine Methylation Report ================================= Total number of C's analysed: 2486290912 Total methylated C's in CpG context: 38715437 Total methylated C's in CHG context: 1881993 Total methylated C's in CHH context: 8347696 Total C to T conversions in CpG context: 284892928 Total C to T conversions in CHG context: 443141610 Total C to T conversions in CHH context: 1709311248 C methylated in CpG context: 12.0% C methylated in non-CpG context: 0.5%