Alignment Stats
| Sequence pairs analysed in total |
199653889 |
| Paired-end alignments with a unique best hit |
111541442 |
| Pairs without alignments under any condition |
57418948 |
| Pairs that did not map uniquely |
30693499 |
| Genomic sequence context not extractable (edges of chromosomes) |
1380 |
|
|
Cytosine Methylation
| Total C's analysed |
4485323711 |
| Methylated C's in CpG context |
71722745 |
| Methylated C's in CHG context |
3518077 |
| Methylated C's in CHH context |
15860797 |
| Methylated C's in Unknown context |
363361 |
| Unmethylated C's in CpG context |
522766214 |
| Unmethylated C's in CHG context |
810110614 |
| Unmethylated C's in CHH context |
3061345264 |
| Unmethylated C's in Unknown context |
14348391 |
| Percentage methylation (CpG context) |
12.1% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
28112102 |
original top strand |
| CTOT |
28046167 |
complementary to original top strand |
| CTOB |
27650327 |
complementary to original bottom strand |
| OB |
27731466 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
111540062 |
| Unique alignments |
99571767 |
| Duplicates removed |
11968295 |
| Duplicated alignments were found at 9960968 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2486290912 |
| Methylated C's in CpG context |
38715437 |
| Methylated C's in CHG context |
1881993 |
| Methylated C's in CHH context |
8347696 |
| Unmethylated C's in CpG context |
284892928 |
| Unmethylated C's in CHG context |
443141610 |
| Unmethylated C's in CHH context |
1709311248 |
| Percentage methylation (CpG context) |
12.0% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
