16F_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 94179724 lines in total Total number of methylation call strings processed: 188359448 Final Cytosine Methylation Report ================================= Total number of C's analysed: 2377770409 Total methylated C's in CpG context: 37346078 Total methylated C's in CHG context: 1784502 Total methylated C's in CHH context: 7425685 Total C to T conversions in CpG context: 268205283 Total C to T conversions in CHG context: 418913612 Total C to T conversions in CHH context: 1644095249 C methylated in CpG context: 12.2% C methylated in non-CpG context: 0.4%