Alignment Stats
| Sequence pairs analysed in total |
184170994 |
| Paired-end alignments with a unique best hit |
103096144 |
| Pairs without alignments under any condition |
53479707 |
| Pairs that did not map uniquely |
27595143 |
| Genomic sequence context not extractable (edges of chromosomes) |
342 |
|
|
Cytosine Methylation
| Total C's analysed |
4112186084 |
| Methylated C's in CpG context |
67140496 |
| Methylated C's in CHG context |
3202091 |
| Methylated C's in CHH context |
13160640 |
| Methylated C's in Unknown context |
286211 |
| Unmethylated C's in CpG context |
470893717 |
| Unmethylated C's in CHG context |
734473042 |
| Unmethylated C's in CHH context |
2823316098 |
| Unmethylated C's in Unknown context |
13163858 |
| Percentage methylation (CpG context) |
12.5% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
25858184 |
original top strand |
| CTOT |
25751911 |
complementary to original top strand |
| CTOB |
25694337 |
complementary to original bottom strand |
| OB |
25791370 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
103095802 |
| Unique alignments |
94179724 |
| Duplicates removed |
8916078 |
| Duplicated alignments were found at 8089051 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2377770409 |
| Methylated C's in CpG context |
37346078 |
| Methylated C's in CHG context |
1784502 |
| Methylated C's in CHH context |
7425685 |
| Unmethylated C's in CpG context |
268205283 |
| Unmethylated C's in CHG context |
418913612 |
| Unmethylated C's in CHH context |
1644095249 |
| Percentage methylation (CpG context) |
12.2% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
