Alignment Stats
| Sequence pairs analysed in total |
217295607 |
| Paired-end alignments with a unique best hit |
124898218 |
| Pairs without alignments under any condition |
57467614 |
| Pairs that did not map uniquely |
34929775 |
| Genomic sequence context not extractable (edges of chromosomes) |
132 |
|
|
Cytosine Methylation
| Total C's analysed |
5245651403 |
| Methylated C's in CpG context |
92402811 |
| Methylated C's in CHG context |
3795552 |
| Methylated C's in CHH context |
15373578 |
| Methylated C's in Unknown context |
422443 |
| Unmethylated C's in CpG context |
616600861 |
| Unmethylated C's in CHG context |
959301177 |
| Unmethylated C's in CHH context |
3558177424 |
| Unmethylated C's in Unknown context |
16442872 |
| Percentage methylation (CpG context) |
13.0% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
31254632 |
original top strand |
| CTOT |
31176521 |
complementary to original top strand |
| CTOB |
31189603 |
complementary to original bottom strand |
| OB |
31277330 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
124898086 |
| Unique alignments |
112840017 |
| Duplicates removed |
12058069 |
| Duplicated alignments were found at 10786346 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2895601370 |
| Methylated C's in CpG context |
49622161 |
| Methylated C's in CHG context |
2041725 |
| Methylated C's in CHH context |
8365379 |
| Unmethylated C's in CpG context |
336438857 |
| Unmethylated C's in CHG context |
523821535 |
| Unmethylated C's in CHH context |
1975311713 |
| Percentage methylation (CpG context) |
12.9% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
