Alignment Stats
| Sequence pairs analysed in total |
192759606 |
| Paired-end alignments with a unique best hit |
112355995 |
| Pairs without alignments under any condition |
51523832 |
| Pairs that did not map uniquely |
28879779 |
| Genomic sequence context not extractable (edges of chromosomes) |
106 |
|
|
Cytosine Methylation
| Total C's analysed |
4754445853 |
| Methylated C's in CpG context |
84765766 |
| Methylated C's in CHG context |
3297706 |
| Methylated C's in CHH context |
13082502 |
| Methylated C's in Unknown context |
347166 |
| Unmethylated C's in CpG context |
534551994 |
| Unmethylated C's in CHG context |
849789941 |
| Unmethylated C's in CHH context |
3268957944 |
| Unmethylated C's in Unknown context |
15161189 |
| Percentage methylation (CpG context) |
13.7% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
28265285 |
original top strand |
| CTOT |
27896844 |
complementary to original top strand |
| CTOB |
27910481 |
complementary to original bottom strand |
| OB |
28283279 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
112355889 |
| Unique alignments |
101143882 |
| Duplicates removed |
11212007 |
| Duplicated alignments were found at 10064165 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2725400659 |
| Methylated C's in CpG context |
47153262 |
| Methylated C's in CHG context |
1834477 |
| Methylated C's in CHH context |
7382974 |
| Unmethylated C's in CpG context |
302909324 |
| Unmethylated C's in CHG context |
481680820 |
| Unmethylated C's in CHH context |
1884439802 |
| Percentage methylation (CpG context) |
13.5% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
